microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR3929 Gene

Subcategory (RNA class) for MIR3929 Gene

miRNA

Number of RNA Genes sources:

3 / 17

Aliases for MIR3929 Gene

  • MicroRNA 3929 2 3 5
  • Hsa-Mir-3929 2 3
  • Hsa-MiR-3929 163 173
  • MIR3929 2 5
  • MIMAT0018206 50
  • MI0016439 50

External Ids for MIR3929 Gene

Previous GeneCards Identifiers for MIR3929 Gene

  • GC18U900629
  • GC18M033516

Summaries for MIR3929 Gene

Entrez Gene Summary for MIR3929 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3929 Gene

MIR3929 (MicroRNA 3929) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3929 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR3929 Gene

Genomics for MIR3929 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR3929 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J035934 Enhancer 0.8 Ensembl ENCODE 600.7 -0.1 -88 0.3 CREB1 JUND HDAC1 SOX6 EP300 CTBP1 CEBPB JUN GTF2F1 SREBF2 MIR3929 ENSG00000267627 MIR187 C18orf21 RPRD1A RF00017-2658 lnc-C18orf21-1 lnc-RPRD1A-5 GALNT1
GH18J035933 Enhancer 0.6 Ensembl 600.7 +0.2 241 0.2 HDAC1 SREBF2 MAX TBP CEBPG POLR3A ATF4 ATF7 TRIM24 ARID1B MIR3929 ENSG00000267627 MIR187 C18orf21 lnc-C18orf21-1 lnc-RPRD1A-5 GALNT1
GH18J035938 Enhancer 0.8 Ensembl ENCODE 0.7 -4.6 -4559 2.6 CTCF ZNF629 KDM1A ZNF501 FOXJ2 ZXDB ESR1 ZNF580 KLF4 YY1 ENSG00000267627 C18orf21 MIR187 RPRD1A MIR3929 RF00017-2658 lnc-C18orf21-1 lnc-RPRD1A-5 GALNT1
GH18J035923 Enhancer 0.3 Ensembl 0.4 +9.9 9941 1.2 ZIC2 FEZF1 lnc-C18orf21-1 ENSG00000267627 MIR3929 lnc-RPRD1A-5 C18orf21 GALNT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3929 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR3929 Gene

Genomic Locations for MIR3929 Gene
chr18:35,934,088-35,934,142
(GRCh38/hg38)
Size:
55 bases
Orientation:
Minus strand
chr18:33,514,051-33,514,105
(GRCh37/hg19)
Size:
55 bases
Orientation:
Minus strand

Genomic View for MIR3929 Gene

Genes around MIR3929 on UCSC Golden Path with GeneCards custom track
MIR3929 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR3929 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3929 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3929 Gene

Proteins for MIR3929 Gene

Post-translational modifications for MIR3929 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3929 Gene

Domains & Families for MIR3929 Gene

Gene Families for MIR3929 Gene

HGNC:
genes like me logo Genes that share domains with MIR3929: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3929 Gene

Function for MIR3929 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3929 Gene

Localization for MIR3929 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3929 Gene

Pathways & Interactions for MIR3929 Gene

PathCards logo

SuperPathways for MIR3929 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR3929 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR3929 Gene

Drugs & Compounds for MIR3929 Gene

No Compound Related Data Available

Transcripts for MIR3929 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR3929 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A325_9606 precursor_RNA 55 4

HGNC: 38945,

RefSeq: NR_037497,

Ensembl: ENST00000584497 (view in UCSC) ,

miRBase: MI0016439,

URS00005BE56D_9606 miRNA 23 4

RefSeq: NR_037497,

LncBase: hsa-miR-3929,

miRBase: MIMAT0018206,

TarBase: hsa-miR-3929,

MIR3929 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3929 Gene

No ASD Table

Relevant External Links for MIR3929 Gene

GeneLoc Exon Structure for
MIR3929

No data available for mRNA/cDNA for MIR3929 Gene

Expression for MIR3929 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3929 Gene

Orthologs for MIR3929 Gene

Evolution for MIR3929 Gene

ENSEMBL:
Gene Tree for MIR3929 (if available)
TreeFam:
Gene Tree for MIR3929 (if available)

No data available for Orthologs for MIR3929 Gene

Paralogs for MIR3929 Gene

No data available for Paralogs for MIR3929 Gene

Variants for MIR3929 Gene

Additional dbSNP identifiers (rs#s) for MIR3929 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR3929 Gene

Variant ID Type Subtype PubMed ID
nsv1065113 CNV loss 25217958

Additional Variant Information for MIR3929 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3929

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR3929 Gene

Disorders for MIR3929 Gene

Additional Disease Information for MIR3929

No disorders were found for MIR3929 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3929 Gene

Publications for MIR3929 Gene

  1. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton CJ … Gunaratne PH (PloS one 2010) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR3929 Gene

Sources for MIR3929 Gene