microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR3925 Gene

Data sources for MIR3925 Gene:

RNA type for MIR3925 Gene

miRNA

Aliases for MIR3925 Gene

External Ids for MIR3925 Gene

Previous GeneCards Identifiers for MIR3925 Gene

  • GC06U902091
  • GC06M036594
  • GC06M038970
  • GC06M039789
  • GC06M039968
  • GC06M041300
  • GC06M036730
  • GC06M036727
  • GC06M037031
  • GC06M037381
  • GC06M037737
  • GC06M038084
  • GC06M038473
  • GC06M038819
  • GC06M042230
  • GC06M043485

Summaries for MIR3925 Gene

Entrez Gene Summary for MIR3925 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3925 Gene

MIR3925 (MicroRNA 3925) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR3925 Gene

Genomics for MIR3925 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR3925 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J036622 Promoter 0.5 Ensembl 250.7 -0.2 -189 0.2 MAX MEIS2 MIR3925 CDKN1A ENSG00000251864 LAP3P2 RAB44 PI16 C6orf89 LOC105375038 SRSF3 HSALNG0049754
GH06J036620 Enhancer 0.3 dbSUPER 250.7 +1.2 1229 1.1 ZIC2 MIR3925 ENSG00000251864 LAP3P2 CDKN1A ETV7 RAB44 PI16 C6orf89 hsa-miR-5095-425 SRSF3
GH06J036623 Enhancer 1.1 ENCODE dbSUPER 0.7 -2.0 -2018 2.9 BCLAF1 ZNF207 ZNF654 MYC IKZF1 SSRP1 CEBPA NFIC CTCF REST ENSG00000251864 LAP3P2 CDKN1A CMTR1 RAB44 KCTD20 BRPF3 PI16 C6orf89 MIR3925
GH06J036633 Enhancer 1 Ensembl ENCODE 0.4 -12.0 -11989 2.6 ZNF600 YY1 FEZF1 ZFP64 KMT2B RXRA SMAD4 ZNF511 SAP130 MIER3 ETV7 KCTD20 STK38 LOC105375038 MIR3925 CDKN1A SRSF3 HSALNG0049754 RF00017-4996 RF00017-4994
GH06J036628 Enhancer 0.8 ENCODE dbSUPER 0.4 -6.7 -6721 1.4 SMARCA5 BHLHE40 SPI1 ZBTB33 IKZF1 HDGF NR2F1 EGR2 IKZF2 CREM KCTD20 ETV7 MIR3925 LOC105375038 SRSF3 CDKN1A HSALNG0049754 RF00017-4996 RF00017-4994 RF00017-4998
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3925 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR3925 Gene

Latest Assembly
chr6:36,622,436-36,622,512
(GRCh38/hg38)
Size:
77 bases
Orientation:
Minus strand

Previous Assembly
chr6:36,590,213-36,590,289
(GRCh37/hg19 by Entrez Gene)
Size:
77 bases
Orientation:
Minus strand

chr6:36,590,213-36,590,289
(GRCh37/hg19 by Ensembl)
Size:
77 bases
Orientation:
Minus strand

Genomic View for MIR3925 Gene

Genes around MIR3925 on UCSC Golden Path with GeneCards custom track
MIR3925 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR3925 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3925 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3925 Gene

Proteins for MIR3925 Gene

Post-translational modifications for MIR3925 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3925 Gene

Domains & Families for MIR3925 Gene

Gene Families for MIR3925 Gene

HGNC:
genes like me logo Genes that share domains with MIR3925: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3925 Gene

Function for MIR3925 Gene

Phenotypes From GWAS Catalog for MIR3925 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3925 Gene

Localization for MIR3925 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3925 Gene

Pathways & Interactions for MIR3925 Gene

PathCards logo

SuperPathways for MIR3925 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR3925 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR3925 Gene

Drugs & Compounds for MIR3925 Gene

No Compound Related Data Available

Transcripts for MIR3925 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR3925 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075CC9E_9606 pre_miRNA 77 3

RefSeq: NR_037491,

Ensembl: ENST00000584674 (view in UCSC) ,

miRBase: MI0016433,

URS0000249054_9606 miRNA 22 3

RefSeq: NR_037491,

miRBase: MIMAT0018200,

ENA: FR772820.1:1..22:ncRNA,

URS0000295AD8_9606 miRNA 21 3

RefSeq: NR_037491,

miRBase: MIMAT0019228,

ENA: FR772819.1:1..21:ncRNA,

MIR3925 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3925 Gene

No ASD Table

Relevant External Links for MIR3925 Gene

GeneLoc Exon Structure for
MIR3925

No data available for mRNA/cDNA for MIR3925 Gene

Expression for MIR3925 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3925 Gene

genes like me logo Genes that share expression patterns with MIR3925: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3925 Gene

Orthologs for MIR3925 Gene

Evolution for MIR3925 Gene

ENSEMBL:
Gene Tree for MIR3925 (if available)
TreeFam:
Gene Tree for MIR3925 (if available)
Alliance of Genome Resources:
Additional Orthologs for MIR3925

No data available for Orthologs for MIR3925 Gene

Paralogs for MIR3925 Gene

No data available for Paralogs for MIR3925 Gene

Variants for MIR3925 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR3925 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR3925 Gene

Variant ID Type Subtype PubMed ID
esv3608709 CNV loss 21293372
nsv1015689 CNV gain 25217958

Additional Variant Information for MIR3925 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3925
Leiden Open Variation Database (LOVD)
MIR3925

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR3925 Gene

Disorders for MIR3925 Gene

Additional Disease Information for MIR3925

No disorders were found for MIR3925 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3925 Gene

Publications for MIR3925 Gene

  1. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3
  2. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton CJ … Gunaratne PH (PloS one 2010) 3
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR3925 Gene

Sources for MIR3925 Gene