microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR3923 Gene

Subcategory (RNA class) for MIR3923 Gene

miRNA

Number of RNA Genes sources:

3 / 17

Aliases for MIR3923 Gene

  • MicroRNA 3923 2 3 5
  • Hsa-Mir-3923 2 3
  • Hsa-MiR-3923 163 173
  • MIR3923 2 5
  • MIMAT0018198 50
  • MI0016430 50

External Ids for MIR3923 Gene

Previous GeneCards Identifiers for MIR3923 Gene

  • GC03U901715

Summaries for MIR3923 Gene

Entrez Gene Summary for MIR3923 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3923 Gene

MIR3923 (MicroRNA 3923) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3923 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR3923 Gene

Genomics for MIR3923 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR3923 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J079507 Enhancer 0.2 FANTOM5 600.7 +0.0 44 0.1 MIR3923 ROBO1 MN298114-140
GH03J079521 Enhancer 0.5 Ensembl 0.4 +13.7 13713 0.4 CTCF REST RAD21 SCRT2 SMC3 CUX1 ZNF654 ELF3 MIXL1 MIR3923 MN298114-140 ROBO1
GH03J079514 Enhancer 0.4 Ensembl 0.4 +7.2 7214 1 RCOR1 RFX5 CHD2 GATA2 MIR3923 MN298114-140 ROBO1
GH03J079490 Enhancer 0.4 Ensembl ENCODE 0.4 -17.2 -17186 1.8 CTCF ROBO1 piR-56341-150 MIR3923
GH03J079604 Enhancer 0.5 Ensembl 0.2 +96.9 96914 0.8 CEBPG CEBPB FOXA2 JUN RCOR1 JUND EP300 MIR3923 MN298114-140 ROBO1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3923 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR3923 Gene

Genomic Locations for MIR3923 Gene
chr3:79,507,887-79,507,969
(GRCh38/hg38)
Size:
83 bases
Orientation:
Plus strand
chr3:79,557,037-79,557,119
(GRCh37/hg19)
Size:
83 bases
Orientation:
Plus strand

Genomic View for MIR3923 Gene

Genes around MIR3923 on UCSC Golden Path with GeneCards custom track
MIR3923 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR3923 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3923 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3923 Gene

Proteins for MIR3923 Gene

Post-translational modifications for MIR3923 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3923 Gene

Domains & Families for MIR3923 Gene

Gene Families for MIR3923 Gene

HGNC:
genes like me logo Genes that share domains with MIR3923: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3923 Gene

Function for MIR3923 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3923 Gene

Localization for MIR3923 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIR3923 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3923 Gene

Pathways & Interactions for MIR3923 Gene

PathCards logo

SuperPathways for MIR3923 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR3923 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR3923 Gene

Drugs & Compounds for MIR3923 Gene

No Compound Related Data Available

Transcripts for MIR3923 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR3923 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D365_9606 precursor_RNA 83 4

HGNC: 38978,

RefSeq: NR_037488,

Ensembl: ENST00000579521 (view in UCSC) ,

miRBase: MI0016430,

URS000075D491_9606 miRNA 22 4

RefSeq: NR_037488,

LncBase: hsa-miR-3923,

miRBase: MIMAT0018198,

TarBase: hsa-miR-3923,

MIR3923 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3923 Gene

No ASD Table

Relevant External Links for MIR3923 Gene

GeneLoc Exon Structure for
MIR3923

No data available for mRNA/cDNA for MIR3923 Gene

Expression for MIR3923 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3923 Gene

Orthologs for MIR3923 Gene

Evolution for MIR3923 Gene

ENSEMBL:
Gene Tree for MIR3923 (if available)
TreeFam:
Gene Tree for MIR3923 (if available)

No data available for Orthologs for MIR3923 Gene

Paralogs for MIR3923 Gene

No data available for Paralogs for MIR3923 Gene

Variants for MIR3923 Gene

Additional dbSNP identifiers (rs#s) for MIR3923 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR3923 Gene

Variant ID Type Subtype PubMed ID
esv2422412 CNV deletion 17116639
nsv834747 CNV gain 17160897

Additional Variant Information for MIR3923 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3923

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR3923 Gene

Disorders for MIR3923 Gene

Additional Disease Information for MIR3923

No disorders were found for MIR3923 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3923 Gene

Publications for MIR3923 Gene

  1. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton CJ … Gunaratne PH (PloS one 2010) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR3923 Gene

Sources for MIR3923 Gene