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Aliases for MIR3679 Gene

Subcategory (RNA class) for MIR3679 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3679 Gene

  • MicroRNA 3679 2 3 5
  • Hsa-Mir-3679 3
  • Mir-3679 3

External Ids for MIR3679 Gene

Previous GeneCards Identifiers for MIR3679 Gene

  • GC02U902266
  • GC02P134887

Summaries for MIR3679 Gene

Entrez Gene Summary for MIR3679 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3679 Gene

MIR3679 (MicroRNA 3679) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3679 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3679 Gene

Genomics for MIR3679 Gene

GeneHancer (GH) Regulatory Elements for MIR3679 Gene

Promoters and enhancers for MIR3679 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I134127 Enhancer 0.7 ENCODE dbSUPER 550.8 +0.6 560 0.2 ZNF316 CBFB EBF1 MAFK RUNX3 EMSY MIR3679 MGAT5 PIR46678
GH02I134117 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.1 -7105 4.1 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 ZNF766 MGAT5 MIR3679
GH02I134122 Enhancer 1 Ensembl ENCODE dbSUPER 0.8 -2.8 -2760 3.8 CTCF TFAP4 FOXA2 NFIA EBF1 REST YY1 ZFP69B NFIC ZNF692 MGAT5 MIR3679
GH02I134131 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +5.1 5145 0.9 FOXA2 ARNT ETS1 TCF12 RXRA REST PPARG NFIL3 ATF4 SMARCA4 MIR3679 PIR46678 MGAT5
GH02I134136 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 +10.4 10384 2.2 ATF3 SCRT2 CBFA2T3 PIR46678 MIR3679 MGAT5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3679 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3679 Gene

Genomic Locations for MIR3679 Gene
chr2:134,127,125-134,127,192
(GRCh38/hg38)
Size:
68 bases
Orientation:
Plus strand
chr2:134,884,696-134,884,763
(GRCh37/hg19)

Genomic View for MIR3679 Gene

Genes around MIR3679 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3679 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3679 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3679 Gene

Proteins for MIR3679 Gene

Post-translational modifications for MIR3679 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3679 Gene

Domains & Families for MIR3679 Gene

Gene Families for MIR3679 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3679: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3679 Gene

Function for MIR3679 Gene

Phenotypes From GWAS Catalog for MIR3679 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3679 Gene

Localization for MIR3679 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3679 Gene

Pathways & Interactions for MIR3679 Gene

SuperPathways for MIR3679 Gene

No Data Available

Interacting Proteins for MIR3679 Gene

Gene Ontology (GO) - Biological Process for MIR3679 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3679 Gene

Drugs & Compounds for MIR3679 Gene

No Compound Related Data Available

Transcripts for MIR3679 Gene

mRNA/cDNA for MIR3679 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3679 Gene

No ASD Table

Relevant External Links for MIR3679 Gene

GeneLoc Exon Structure for
MIR3679
ECgene alternative splicing isoforms for
MIR3679

Expression for MIR3679 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3679 Gene:

MIR3679
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3679 Gene

Orthologs for MIR3679 Gene

Evolution for MIR3679 Gene

ENSEMBL:
Gene Tree for MIR3679 (if available)
TreeFam:
Gene Tree for MIR3679 (if available)

No data available for Orthologs for MIR3679 Gene

Paralogs for MIR3679 Gene

No data available for Paralogs for MIR3679 Gene

Variants for MIR3679 Gene

Sequence variations from dbSNP and Humsavar for MIR3679 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1001653590 -- 134,126,066(+) G/A upstream_transcript_variant
rs1002083070 -- 134,126,261(+) A/G upstream_transcript_variant
rs1006483900 -- 134,125,173(+) G/A upstream_transcript_variant
rs1006515211 -- 134,125,540(+) A/T upstream_transcript_variant
rs1007808368 -- 134,125,168(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3679 Gene

Variant ID Type Subtype PubMed ID
nsv1008965 CNV loss 25217958
dgv7088n54 CNV loss 21841781

Additional Variant Information for MIR3679 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3679

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3679 Gene

Disorders for MIR3679 Gene

Additional Disease Information for MIR3679

No disorders were found for MIR3679 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3679 Gene

Publications for MIR3679 Gene

  1. Salivary microRNAs show potential as a noninvasive biomarker for detecting resectable pancreatic cancer. (PMID: 25538087) Xie Z … Li Z (Cancer prevention research (Philadelphia, Pa.) 2015) 3 58
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  3. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 58
  4. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton CJ … Gunaratne PH (PloS one 2010) 3 58
  5. Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood. (PMID: 20459673) Vaz C … Bhattacharya A (BMC genomics 2010) 3 58

Products for MIR3679 Gene

Sources for MIR3679 Gene

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