Aliases for MIR3659HG Gene

Subcategory (RNA class) for MIR3659HG Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for MIR3659HG Gene

  • MIR3659 Host Gene 2 3 5
  • MIR3659HG 2 5
  • NONHSAG001090.2 91
  • HSALNG0002686 164
  • Lnc-UTP11-1 165

External Ids for MIR3659HG Gene

Summaries for MIR3659HG Gene

GeneCards Summary for MIR3659HG Gene

MIR3659HG (MIR3659 Host Gene) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MIR3659HG Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR3659HG Gene

Genomics for MIR3659HG Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR3659HG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J038046 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 600.7 -0.9 -939 4.4 RNF2 SP1 HNRNPL PRDM10 ZNF629 REST ZNF692 BACH1 TARDBP LARP7 MIR3659HG POU3F1 lnc-POU3F1-3 UTP11
GH01J038094 Enhancer 1.2 VISTA UCNEbase Ensembl 10.6 +47.0 47028 3.9 ZNF341 BCOR SMARCA5 FEZF1 PRDM6 TRIM28 ZMYM3 DACH1 SP7 ZBTB8A MIR3659HG POU3F1 MIR3659 RF00017-166 RRAGC
GH01J038825 Enhancer 1.2 VISTA Ensembl ENCODE 9.8 +784.9 784874 12 CTCF ZNF629 IKZF1 POLR2A ZNF24 REST RAD21 TRIM22 ZNF600 SCRT2 MYCBP GJA9 UTP11 FHL3 MIR3659HG POU3F1 RHBDL2 NDUFS5 piR-45411 lnc-AKIRIN1-7
GH01J038075 Enhancer 0.8 Ensembl 11.4 +29.4 29361 1 REST TFE3 ZNF143 RXRB ZNF740 SOX13 ZNF766 ZBTB26 HDAC2 E2F5 MIR3659HG POU3F1 ENSG00000223589 lnc-POU3F1-4 RRAGC
GH01J038587 Enhancer 0.9 Ensembl ENCODE 9.6 +539.8 539781 1.5 CTCF JUND LARP7 ZNF143 ZNF24 REST RAD21 TRIM22 DPF2 NONO MIR3659HG POU3F1 MYCBP GJA9 HSALNG0002710 lnc-AKIRIN1-13 RRAGC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3659HG on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR3659HG Gene

Genomic Locations for MIR3659HG Gene
chr1:38,046,940-38,121,056
(GRCh38/hg38)
Size:
74,117 bases
Orientation:
Plus strand
chr1:38,512,986-38,584,697
(GRCh37/hg19)
Size:
71,712 bases
Orientation:
Plus strand

Genomic View for MIR3659HG Gene

Genes around MIR3659HG on UCSC Golden Path with GeneCards custom track
MIR3659HG in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR3659HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3659HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3659HG Gene

Proteins for MIR3659HG Gene

Post-translational modifications for MIR3659HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3659HG Gene

Domains & Families for MIR3659HG Gene

Gene Families for MIR3659HG Gene

genes like me logo Genes that share domains with MIR3659HG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3659HG Gene

Function for MIR3659HG Gene

Phenotypes From GWAS Catalog for MIR3659HG Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3659HG Gene

Localization for MIR3659HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3659HG Gene

Pathways & Interactions for MIR3659HG Gene

PathCards logo

SuperPathways for MIR3659HG Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR3659HG Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR3659HG Gene

Drugs & Compounds for MIR3659HG Gene

No Compound Related Data Available

Transcripts for MIR3659HG Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR3659HG Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000028061D_9606 lncRNA 593 5

HGNC: 54306,

Ensembl: ENST00000432922 (view in UCSC) ,

LncBook: HSALNT0005133,

LNCipedia: lnc-UTP11-1:6,

NONCODE: NONHSAT002497.2,

URS00002B306D_9606 lncRNA 573 3

Ensembl: ENST00000428151 (view in UCSC) ,

LNCipedia: lnc-UTP11-1:11,

NONCODE: NONHSAT002498.2,

URS00009BF839_9606 lncRNA 684 2

LncBook: HSALNT0005134,

NONCODE: NONHSAT148747.1,

URS0000D5942D_9606 lncRNA 2858 1

LNCipedia: lnc-UTP11-1:5,

URS0000D57B54_9606 lncRNA 2627 1

LNCipedia: lnc-UTP11-1:10,

MIR3659HG in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3659HG Gene

No ASD Table

Relevant External Links for MIR3659HG Gene

GeneLoc Exon Structure for
MIR3659HG

No data available for mRNA/cDNA for MIR3659HG Gene

Expression for MIR3659HG Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3659HG Gene

Orthologs for MIR3659HG Gene

Evolution for MIR3659HG Gene

ENSEMBL:
Gene Tree for MIR3659HG (if available)
TreeFam:
Gene Tree for MIR3659HG (if available)

No data available for Orthologs for MIR3659HG Gene

Paralogs for MIR3659HG Gene

No data available for Paralogs for MIR3659HG Gene

Variants for MIR3659HG Gene

Additional dbSNP identifiers (rs#s) for MIR3659HG Gene

Additional Variant Information for MIR3659HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3659HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3659HG Gene

Disorders for MIR3659HG Gene

Additional Disease Information for MIR3659HG

No disorders were found for MIR3659HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3659HG Gene

Publications for MIR3659HG Gene

No publications were found for MIR3659HG Gene.

No data available for Mastermind for MIR3659HG Gene

Products for MIR3659HG Gene

Sources for MIR3659HG Gene