microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR3650 Gene

Subcategory (RNA class) for MIR3650 Gene

miRNA

Number of RNA Genes sources:

1 / 17

Aliases for MIR3650 Gene

  • MicroRNA 3650 2 3 5
  • Hsa-Mir-3650 2 3
  • MIR3650 2 5
  • MIMAT0018070 50
  • MI0016050 50

External Ids for MIR3650 Gene

Previous GeneCards Identifiers for MIR3650 Gene

  • GC05U901502
  • GC05P038558

Summaries for MIR3650 Gene

Entrez Gene Summary for MIR3650 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3650 Gene

MIR3650 (MicroRNA 3650) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3650 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR3650 Gene

Genomics for MIR3650 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR3650 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J038552 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.7 +2.2 2166 5.3 CEBPG PRDM10 ZNF629 ZNF692 FOXA1 PRDM1 MTA2 ZIC2 ZSCAN4 RBFOX2 LIFR LIFR-AS1 ENSG00000251257 EGFLAM-AS1 ENSG00000248234 EGFLAM-AS2 EGFLAM MIR3650 lnc-RICTOR-6
GH05J038563 Enhancer 0.3 Ensembl 0.4 -6.3 -6340 0.2 ZNF600 LIFR-AS1 LIFR MIR3650 LOC105374735 EGFLAM
GH05J038561 Enhancer 0.2 Ensembl 0.7 -4.1 -4140 0.2 LIFR LIFR-AS1 MIR3650 LOC105374735 EGFLAM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3650 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR3650 Gene

Genomic Locations for MIR3650 Gene
chr5:38,557,502-38,557,561
(GRCh38/hg38)
Size:
60 bases
Orientation:
Minus strand
chr5:38,557,604-38,557,663
(GRCh37/hg19)
Size:
60 bases
Orientation:
Minus strand

Genomic View for MIR3650 Gene

Genes around MIR3650 on UCSC Golden Path with GeneCards custom track
MIR3650 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR3650 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3650 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3650 Gene

Proteins for MIR3650 Gene

Post-translational modifications for MIR3650 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3650 Gene

Domains & Families for MIR3650 Gene

Gene Families for MIR3650 Gene

HGNC:
genes like me logo Genes that share domains with MIR3650: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3650 Gene

Function for MIR3650 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3650 Gene

Localization for MIR3650 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3650 Gene

Pathways & Interactions for MIR3650 Gene

PathCards logo

SuperPathways for MIR3650 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR3650 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR3650 Gene

Drugs & Compounds for MIR3650 Gene

No Compound Related Data Available

Transcripts for MIR3650 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR3650 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A656_9606 precursor_RNA 60 4

HGNC: 38981,

RefSeq: NR_037423,

Ensembl: ENST00000581972 (view in UCSC) ,

miRBase: MI0016050,

URS000075C93C_9606 miRNA 19 2

RefSeq: NR_037423,

miRBase: MIMAT0018070,

MIR3650 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3650 Gene

No ASD Table

Relevant External Links for MIR3650 Gene

GeneLoc Exon Structure for
MIR3650

No data available for mRNA/cDNA for MIR3650 Gene

Expression for MIR3650 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3650 Gene

Orthologs for MIR3650 Gene

Evolution for MIR3650 Gene

ENSEMBL:
Gene Tree for MIR3650 (if available)
TreeFam:
Gene Tree for MIR3650 (if available)

No data available for Orthologs for MIR3650 Gene

Paralogs for MIR3650 Gene

No data available for Paralogs for MIR3650 Gene

Variants for MIR3650 Gene

Additional dbSNP identifiers (rs#s) for MIR3650 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR3650 Gene

Variant ID Type Subtype PubMed ID
esv3604761 CNV gain 21293372

Additional Variant Information for MIR3650 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3650

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR3650 Gene

Disorders for MIR3650 Gene

Additional Disease Information for MIR3650

No disorders were found for MIR3650 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3650 Gene

Publications for MIR3650 Gene

  1. Discovery of microRNAs and other small RNAs in solid tumors. (PMID: 20483914) Meiri E … Sitbon E (Nucleic acids research 2010) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR3650 Gene

Sources for MIR3650 Gene