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Aliases for MIR3609 Gene

Subcategory (RNA class) for MIR3609 Gene


Quality Score for this RNA gene is


Aliases for MIR3609 Gene

  • MicroRNA 3609 2 3 5
  • Hsa-Mir-3609 3
  • Mir-3609 3

External Ids for MIR3609 Gene

Previous GeneCards Identifiers for MIR3609 Gene

  • GC07U903074
  • GC07P098482

Summaries for MIR3609 Gene

Entrez Gene Summary for MIR3609 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3609 Gene

MIR3609 (MicroRNA 3609) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR3609 include Rectal Disease.

Additional gene information for MIR3609 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3609 Gene

Genomics for MIR3609 Gene

GeneHancer (GH) Regulatory Elements for MIR3609 Gene

Promoters and enhancers for MIR3609 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I098877 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.8 -2.1 -2145 3.3 SMAD1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B POLR2B ZNF213 E2F8 TRRAP ZSCAN25 ZNF655 LOC101927550 LOC100419643 SMURF1 RPS3AP26 PTCD1 LOC100131859 ZNF789
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3609 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3609 Gene

Genomic Locations for MIR3609 Gene
80 bases
Plus strand

Genomic View for MIR3609 Gene

Genes around MIR3609 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3609 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3609 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3609 Gene

Proteins for MIR3609 Gene

Post-translational modifications for MIR3609 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3609 Gene

Domains & Families for MIR3609 Gene

Gene Families for MIR3609 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3609: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3609 Gene

Function for MIR3609 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3609 Gene

Localization for MIR3609 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3609 Gene

Pathways & Interactions for MIR3609 Gene

SuperPathways for MIR3609 Gene

No Data Available

Interacting Proteins for MIR3609 Gene

Gene Ontology (GO) - Biological Process for MIR3609 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR3609 Gene

Drugs & Compounds for MIR3609 Gene

No Compound Related Data Available

Transcripts for MIR3609 Gene

mRNA/cDNA for MIR3609 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3609 Gene

No ASD Table

Relevant External Links for MIR3609 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3609 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3609 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3609 Gene:

genes like me logo Genes that share expression patterns with MIR3609: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3609 Gene

Orthologs for MIR3609 Gene

Evolution for MIR3609 Gene

Gene Tree for MIR3609 (if available)
Gene Tree for MIR3609 (if available)

No data available for Orthologs for MIR3609 Gene

Paralogs for MIR3609 Gene

No data available for Paralogs for MIR3609 Gene

Variants for MIR3609 Gene

Sequence variations from dbSNP and Humsavar for MIR3609 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1002289897 -- 98,880,051(+) A/G upstream_transcript_variant
rs1002405809 -- 98,879,777(+) C/T upstream_transcript_variant
rs1003312691 -- 98,881,343(+) C/T upstream_transcript_variant
rs1007097031 -- 98,880,869(+) C/T upstream_transcript_variant
rs1007214703 -- 98,880,653(+) A/G/T upstream_transcript_variant

Additional Variant Information for MIR3609 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3609 Gene

Disorders for MIR3609 Gene

MalaCards: The human disease database

(1) MalaCards diseases for MIR3609 Gene - From: DISEASES

Disorder Aliases PubMed IDs
rectal disease
  • rectal disorders
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIR3609

genes like me logo Genes that share disorders with MIR3609: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR3609 Gene

Publications for MIR3609 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls. (PMID: 20459774) Witten D … Lui WO (BMC biology 2010) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3609 Gene

Sources for MIR3609 Gene

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