Aliases for MIR34AHG Gene

Data sources for MIR34AHG Gene:

RNA type for MIR34AHG Gene

lncRNA

Aliases for MIR34AHG Gene

External Ids for MIR34AHG Gene

Previous GeneCards Identifiers for MIR34AHG Gene

  • GC01U905260

Summaries for MIR34AHG Gene

GeneCards Summary for MIR34AHG Gene

MIR34AHG (MIR34A Host Gene) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MIR34AHG include Osteogenic Sarcoma.

Rfam classification for MIR34AHG Gene

  • mir-34 microRNA precursor family

Additional gene information for MIR34AHG Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR34AHG Gene

Genomics for MIR34AHG Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR34AHG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J009179 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 250.4 +20.7 20718 4.6 BCLAF1 ZNF207 ZMYM3 POLR2A CEBPA ZIC2 ZBTB10 YY1 MXD4 CTCF HSALNG0000685 LNCTAM34A MIR34A MIR34AHG GPR157 SLC2A5 CTNNBIP1 H6PD HSALNG0000677
GH01J009198 Promoter/Enhancer 1.2 EPDnew Ensembl dbSUPER 250.7 +3.8 3818 0.4 MAFF MAFK NRF1 TAF1 CTCF RAD21 EZH2 HSALNG0000686 MIR34AHG LNCTAM34A HSALNG0000685 H6PD GPR157 HSALNG0000677
GH01J009200 Enhancer 0.9 ENCODE dbSUPER 250.7 +1.1 1066 2.5 ZNF600 ZIC2 BCL11A ZNF513 EBF1 ZFP91 ZNF624 BHLHE40 ZNF2 BATF MIR34AHG GPR157 LZIC H6PD HSALNG0000686 HSALNG0000677
GH01J008870 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 +327.2 327246 12.7 BCLAF1 SP1 ZNF207 NCOR1 ZNF600 MYC IKZF1 SSRP1 JUND ZNF592 ENO1 ENO1-AS1 GPR157 RERE-AS1 CLSTN1 PIK3CD-AS2 MIR34AHG SLC45A1 H6PD lnc-RERE-4
GH01J009685 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.6 -485.9 -485866 5 ZNF207 NCOR1 ZNF600 MYC IKZF1 ZNF592 CEBPA POLR2A NFIC ZIC2 PIK3CD-AS2 HSALNG0000719 lnc-TMEM201-2 MIR34AHG PIK3CD CLSTN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR34AHG on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR34AHG Gene

Latest Assembly
chr1:9,147,857-9,202,619
(GRCh38/hg38)
Size:
54,763 bases
Orientation:
Minus strand

Previous Assembly
chr1:9,208,070-9,242,397
(GRCh37/hg19 by Entrez Gene)
Size:
34,328 bases
Orientation:
Minus strand

chr1:9,242,066-9,262,678
(GRCh37/hg19 by Ensembl)
Size:
20,613 bases
Orientation:
Minus strand

Genomic View for MIR34AHG Gene

Genes around MIR34AHG on UCSC Golden Path with GeneCards custom track
MIR34AHG in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR34AHG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR34AHG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR34AHG Gene

Proteins for MIR34AHG Gene

Post-translational modifications for MIR34AHG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR34AHG Gene

Domains & Families for MIR34AHG Gene

Gene Families for MIR34AHG Gene

genes like me logo Genes that share domains with MIR34AHG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR34AHG Gene

Function for MIR34AHG Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR34AHG Gene

Localization for MIR34AHG Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIR34AHG gene
Compartment Confidence
peroxisome 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR34AHG Gene

Pathways & Interactions for MIR34AHG Gene

PathCards logo

SuperPathways for MIR34AHG Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR34AHG Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035195 gene silencing by miRNA IEA --
genes like me logo Genes that share ontologies with MIR34AHG: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR34AHG Gene

Drugs & Compounds for MIR34AHG Gene

No Compound Related Data Available

Transcripts for MIR34AHG Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR34AHG Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00008BB2C6_9606 lncRNA 1765 3

Ensembl: ENST00000632503 (view in UCSC) ,

LNCipedia: MIR34AHG:13,

NONCODE: NONHSAT000795.2,

URS0000D64872_9606 lncRNA 4457 2

Ensembl: ENST00000635405 (view in UCSC) ,

LNCipedia: MIR34AHG:5,

URS00009C6035_9606 lncRNA 4211 2

Ensembl: ENST00000635687 (view in UCSC) ,

LNCipedia: MIR34AHG:17,

URS00008C434D_9606 lncRNA 411 2

Ensembl: ENST00000437157 (view in UCSC) ,

LNCipedia: MIR34AHG:16,

URS00008E39B8_9606 lncRNA 4157 1

RefSeq: NR_132742,

MIR34AHG in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR34AHG Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR34AHG Gene

No ASD Table

Relevant External Links for MIR34AHG Gene

GeneLoc Exon Structure for
MIR34AHG

Expression for MIR34AHG Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR34AHG Gene

Orthologs for MIR34AHG Gene

Evolution for MIR34AHG Gene

ENSEMBL:
Gene Tree for MIR34AHG (if available)
TreeFam:
Gene Tree for MIR34AHG (if available)
Alliance of Genome Resources:
Additional Orthologs for MIR34AHG

No data available for Orthologs for MIR34AHG Gene

Paralogs for MIR34AHG Gene

No data available for Paralogs for MIR34AHG Gene

Variants for MIR34AHG Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR34AHG Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for MIR34AHG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR34AHG
Leiden Open Variation Database (LOVD)
MIR34AHG

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR34AHG Gene

Disorders for MIR34AHG Gene

MalaCards: The human disease database

(1) MalaCards diseases for MIR34AHG Gene - From: LNC and COP

Disorder Aliases PubMed IDs
osteogenic sarcoma
  • osteosarcoma; osrc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIR34AHG

genes like me logo Genes that share disorders with MIR34AHG: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR34AHG Gene

Publications for MIR34AHG Gene

  1. Transactivation of miR-34a by p53 broadly influences gene expression and promotes apoptosis. (PMID: 17540599) Chang TC … Mendell JT (Molecular cell 2007) 2 3
  2. Transcription factor Oct4 promotes osteosarcoma by regulating lncRNA AK055347. (PMID: 28123573) Fan H … Yang X (Oncology letters 2017) 72
  3. Differential regulation of microRNAs by p53 revealed by massively parallel sequencing: miR-34a is a p53 target that induces apoptosis and G1-arrest. (PMID: 17554199) Tarasov V … Hermeking H (Cell cycle (Georgetown, Tex.) 2007) 3
  4. Transcriptional activation of miR-34a contributes to p53-mediated apoptosis. (PMID: 17540598) Raver-Shapira N … Oren M (Molecular cell 2007) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for MIR34AHG Gene

Sources for MIR34AHG Gene