microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR338 Gene

Subcategory (RNA class) for MIR338 Gene

miRNA

Quality Score for this RNA gene is

17

Aliases for MIR338 Gene

  • MicroRNA 338 2 3 5
  • Hsa-MiR-338-5p 168 179
  • Hsa-MiR-338-3p 168 179
  • MIMAT0000763 53
  • MIMAT0004701 53
  • Hsa-Mir-338 3
  • MI0000814 53
  • Mir-338 3
  • MIRN338 3
  • RF00686 174
  • MIR338 2

External Ids for MIR338 Gene

Previous HGNC Symbols for MIR338 Gene

  • MIRN338

Previous GeneCards Identifiers for MIR338 Gene

  • GC17M076717
  • GC17M079100
  • GC17M079105

Summaries for MIR338 Gene

Entrez Gene Summary for MIR338 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR338 Gene

MIR338 (MicroRNA 338) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR338 include Follicular Lymphoma and Oral Squamous Cell Carcinoma. Among its related pathways are Parkinsons Disease Pathway.

Rfam classification for MIR338 Gene

Additional gene information for MIR338 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR338 Gene

Genomics for MIR338 Gene

GeneHancer (GH) Regulatory Elements for MIR338 Gene

Promoters and enhancers for MIR338 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J081126 Promoter/Enhancer 0.7 Ensembl dbSUPER 750.6 +0.7 656 0.6 HIC1 KLF1 MIR3065 MIR338 MIR657 lnc-CEP131-1 AATK BAIAP2 SLC38A10 lnc-CEP131-2 lnc-TMEM105-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR338 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR338 Gene

Genomic Locations for MIR338 Gene
chr17:81,125,878-81,125,957
(GRCh38/hg38)
Size:
80 bases
Orientation:
Minus strand
chr17:79,099,683-79,099,749
(GRCh37/hg19)
Size:
67 bases
Orientation:
Minus strand

Genomic View for MIR338 Gene

Genes around MIR338 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR338 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR338 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR338 Gene

Proteins for MIR338 Gene

Post-translational modifications for MIR338 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR338 Gene

Domains & Families for MIR338 Gene

Gene Families for MIR338 Gene

HGNC:
genes like me logo Genes that share domains with MIR338: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR338 Gene

Function for MIR338 Gene

Gene Ontology (GO) - Molecular Function for MIR338 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA 21671467
genes like me logo Genes that share ontologies with MIR338: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR338 Gene

Localization for MIR338 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIR338 gene
Compartment Confidence
extracellular 1
cytoskeleton 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for MIR338 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space HDA 26646931
GO:0016442 RISC complex IEA --
genes like me logo Genes that share ontologies with MIR338: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for MIR338 Gene

Pathways & Interactions for MIR338 Gene

PathCards logo

SuperPathways for MIR338 Gene

SuperPathway Contained pathways
1 Parkinsons Disease Pathway
genes like me logo Genes that share pathways with MIR338: view

Pathways by source for MIR338 Gene

1 BioSystems pathway for MIR338 Gene

Gene Ontology (GO) - Biological Process for MIR338 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010629 negative regulation of gene expression IDA 21671467
GO:0030336 negative regulation of cell migration IDA 21671467
GO:0035195 gene silencing by miRNA IDA,IEA --
genes like me logo Genes that share ontologies with MIR338: view

No data available for SIGNOR curated interactions for MIR338 Gene

Drugs & Compounds for MIR338 Gene

No Compound Related Data Available

Transcripts for MIR338 Gene

mRNA/cDNA for MIR338 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(3) miRBase transcripts :
(6) ENA transcripts :
(2) TarBase transcripts :
(1) Rfam transcripts :
(2) LncBase transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR338 Gene

No ASD Table

Relevant External Links for MIR338 Gene

GeneLoc Exon Structure for
MIR338
ECgene alternative splicing isoforms for
MIR338

Expression for MIR338 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR338 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR338 Gene:

MIR338
genes like me logo Genes that share expression patterns with MIR338: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR338 Gene

Orthologs for MIR338 Gene

Evolution for MIR338 Gene

ENSEMBL:
Gene Tree for MIR338 (if available)
TreeFam:
Gene Tree for MIR338 (if available)

No data available for Orthologs for MIR338 Gene

Paralogs for MIR338 Gene

No data available for Paralogs for MIR338 Gene

Variants for MIR338 Gene

Sequence variations from dbSNP and Humsavar for MIR338 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000140085 -- 81,126,020(-) G/A upstream_transcript_variant
rs1000449700 -- 81,125,854(-) C/G/T downstream_transcript_variant
rs1001322564 -- 81,126,426(-) C/T upstream_transcript_variant
rs1002940336 -- 81,127,274(-) C/A/G/T upstream_transcript_variant
rs1004637317 -- 81,125,638(-) T/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR338 Gene

Variant ID Type Subtype PubMed ID
dgv3292n100 CNV gain 25217958
esv26223 CNV gain+loss 19812545
nsv1065052 CNV gain 25217958
nsv1066947 CNV loss 25217958
nsv470619 CNV loss 18288195
nsv523417 CNV gain 19592680
nsv828128 CNV loss 20364138
nsv833564 CNV loss 17160897
nsv952388 CNV deletion 24416366

Additional Variant Information for MIR338 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR338

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR338 Gene

Disorders for MIR338 Gene

MalaCards: The human disease database

(12) MalaCards diseases for MIR338 Gene - From: miR2Disease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
follicular lymphoma
  • lymphoma, follicular
oral squamous cell carcinoma
  • mouth squamous cell carcinoma
hepatocellular carcinoma
  • hcc
melanoma
  • malignant melanoma
lung cancer
  • adenocarcinoma of lung
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIR338

genes like me logo Genes that share disorders with MIR338: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR338 Gene

Publications for MIR338 Gene

  1. MiR-218 inhibits invasion and metastasis of gastric cancer by targeting the Robo1 receptor. (PMID: 20300657) Tie J … Fan D (PLoS genetics 2010) 2 3 56
  2. microRNA-205 and microRNA-338-3p Reduces Cell Apoptosis in Prostate Carcinoma Tissue and LNCaP Prostate Carcinoma Cells by Directly Targeting the B-Cell Lymphoma 2 (Bcl-2) Gene. (PMID: 30741252) Zhang X … Zhang J (Medical science monitor : international medical journal of experimental and clinical research 2019) 3 56
  3. Long noncoding RNA CRNDE promotes non-small cell lung cancer progression via sponging microRNA-338-3p. (PMID: 30554121) Jing H … Lv X (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 3 56
  4. LncRNA SNHG15 acts as an oncogene in prostate cancer by regulating miR-338-3p/FKBP1A axis. (PMID: 30981837) Zhang Y … Zhang Q (Gene 2019) 3 56
  5. Genome-wide identification of microRNAs regulating the human prion protein. (PMID: 30451334) Pease D … Aguzzi A (Brain pathology (Zurich, Switzerland) 2019) 3 56

Products for MIR338 Gene

Sources for MIR338 Gene