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MIR3199-2 Gene(RNA Gene)

MicroRNA 3199-2

GCID:
GC22P027921
GIFtS:
13
Genes Participants
UDN Logo

Aliases for MIR3199-2 Gene

Subcategory (RNA class) for MIR3199-2 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3199-2 Gene

  • MicroRNA 3199-2 2 3 5
  • Hsa-Mir-3199-2 3
  • Mir-3199-2 3

External Ids for MIR3199-2 Gene

Previous GeneCards Identifiers for MIR3199-2 Gene

  • GC22U900724
  • GC22P028319
  • GC22P028322
  • GC22P028326

Summaries for MIR3199-2 Gene

Entrez Gene Summary for MIR3199-2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3199-2 Gene

MIR3199-2 (MicroRNA 3199-2) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3199-2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3199-2 Gene

Genomics for MIR3199-2 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for MIR3199-2 Gene

Promoters and enhancers for MIR3199-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH22I027917 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 550.8 -1.1 -1109 3.4 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 POLR2B SP3 SP5 NFYC TTC28-AS1 PITPNB ENSG00000277460 MIR3199-1 MIR3199-2 TTC28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3199-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3199-2 Gene

Genomic Locations for MIR3199-2 Gene
chr22:27,920,526-27,920,611
(GRCh38/hg38)
Size:
86 bases
Orientation:
Plus strand
chr22:28,316,514-28,316,599
(GRCh37/hg19)

Genomic View for MIR3199-2 Gene

Genes around MIR3199-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3199-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3199-2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR3199-2 Gene

Proteins for MIR3199-2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR3199-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3199-2 Gene

Domains & Families for MIR3199-2 Gene

Gene Families for MIR3199-2 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3199-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3199-2 Gene

Function for MIR3199-2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for MIR3199-2 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3199-2 Gene

Localization for MIR3199-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3199-2 Gene

Pathways & Interactions for MIR3199-2 Gene

SuperPathways for MIR3199-2 Gene

PathCards logo More details on SuperPathways for MIR3199-2
No Data Available

Interacting Proteins for MIR3199-2 Gene

Gene Ontology (GO) - Biological Process for MIR3199-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3199-2 Gene

Drugs & Compounds for MIR3199-2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR3199-2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MIR3199-2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3199-2 Gene

No ASD Table

Relevant External Links for MIR3199-2 Gene

GeneLoc Exon Structure for
MIR3199-2
ECgene alternative splicing isoforms for
MIR3199-2

Expression for MIR3199-2 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3199-2 Gene

mRNA expression in normal human tissues for MIR3199-2 Gene
mRNA expression by GTEx for MIR3199-2 Gene
genes like me logo Genes that share expression patterns with MIR3199-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3199-2 Gene

Orthologs for MIR3199-2 Gene

Evolution for MIR3199-2 Gene

ENSEMBL:
Gene Tree for MIR3199-2 (if available)
TreeFam:
Gene Tree for MIR3199-2 (if available)

No data available for Orthologs for MIR3199-2 Gene

Paralogs for MIR3199-2 Gene

No data available for Paralogs for MIR3199-2 Gene

Variants for MIR3199-2 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for MIR3199-2 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000318958 -- 27,920,383(+) C/G upstream_transcript_variant
rs1000347080 -- 27,920,029(+) A/C upstream_transcript_variant
rs1000534571 -- 27,919,665(+) A/T upstream_transcript_variant
rs1001568695 -- 27,919,695(+) C/A/G upstream_transcript_variant
rs1002302311 -- 27,918,982(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3199-2 Gene

Variant ID Type Subtype PubMed ID
nsv1129409 OTHER inversion 24896259

Additional Variant Information for MIR3199-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3199-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3199-2 Gene

Disorders for MIR3199-2 Gene

Additional Disease Information for MIR3199-2

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MIR3199-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3199-2 Gene

Publications for MIR3199-2 Gene

  1. hsa-mir-3199-2 and hsa-mir-1293 as Novel Prognostic Biomarkers of Papillary Renal Cell Carcinoma by COX Ratio Risk Regression Model Screening. (PMID: 28338236) Luo W … Wang XX (Journal of cellular biochemistry 2017) 3 58
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  3. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 58
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3199-2 Gene

Sources for MIR3199-2 Gene

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