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Aliases for MIR3198-2 Gene

Subcategory (RNA class) for MIR3198-2 Gene


Quality Score for this RNA gene is


Aliases for MIR3198-2 Gene

  • MicroRNA 3198-2 2 3 5
  • Hsa-Mir-3198-2 3
  • Mir-3198-2 3

External Ids for MIR3198-2 Gene

Previous GeneCards Identifiers for MIR3198-2 Gene

  • GC12U901591
  • GC12M054653
  • GC12M054657
  • GC12M054670

Summaries for MIR3198-2 Gene

Entrez Gene Summary for MIR3198-2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3198-2 Gene

MIR3198-2 (MicroRNA 3198-2) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Response to elevated platelet cytosolic Ca2+ and Factors involved in megakaryocyte development and platelet production.

Additional gene information for MIR3198-2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3198-2 Gene

Genomics for MIR3198-2 Gene

GeneHancer (GH) Regulatory Elements for MIR3198-2 Gene

Promoters and enhancers for MIR3198-2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I054228 Enhancer 1.1 Ensembl ENCODE 550.8 +1.7 1676 2.3 PKNOX1 INSM2 KLF17 ZNF76 FEZF1 ZNF2 ZEB1 ZNF335 EGR1 ZNF366 MIR3198-2 GPR84 CBX5 COPZ1 MIR148B RNU6-950P HOXC8 HOXC-AS1 ZNF385A HOXC-AS2
GH12I054215 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.4 +14.4 14375 2.6 HDGF PKNOX1 ARNT SIN3A ZNF2 ZNF213 E2F8 ZNF143 SP3 REST GPR84 HOXC8 HOXC-AS1 HOXC6 HOXC-AS2 HOXC9 HOXC4 HOXC5 ENSG00000257534 FLJ12825
GH12I054214 Enhancer 1.2 Ensembl ENCODE 0.4 +16.5 16490 0.8 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 ZBTB7B YY1 ZNF213 ZNF207 LOC100240734 ENSG00000257534 MIR3198-2 GC12P054193
GH12I054219 Enhancer 1.1 Ensembl ENCODE 0.4 +11.2 11235 1.2 HDAC1 PKNOX1 RB1 ARNT KLF17 ZBTB40 ZNF2 RAD21 RFX5 ZEB1 GPR84 COPZ1 RNU6-950P CBX5 MIR148B HOXC8 HOXC6 HOXC9 HOXC-AS1 HOXC-AS2
GH12I054227 Enhancer 0.5 Ensembl 0.8 +3.5 3475 0.8 ZNF366 NRF1 PRDM10 ZIC2 MYC PRDM1 GPR84 CBX5 COPZ1 MIR148B RNU6-950P HOXC8 HOXC-AS1 ZNF385A HOXC-AS2 HOXC9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3198-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3198-2 Gene

Genomic Locations for MIR3198-2 Gene
80 bases
Minus strand

Genomic View for MIR3198-2 Gene

Genes around MIR3198-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3198-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3198-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3198-2 Gene

ORGUL Member Location for MIR3198-2 Gene

ORGUL Member Location for MIR3198-2 gene

Proteins for MIR3198-2 Gene

Post-translational modifications for MIR3198-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3198-2 Gene

Domains & Families for MIR3198-2 Gene

Gene Families for MIR3198-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3198-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3198-2 Gene

Function for MIR3198-2 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3198-2 Gene

Localization for MIR3198-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3198-2 Gene

Pathways & Interactions for MIR3198-2 Gene

genes like me logo Genes that share pathways with MIR3198-2: view

Pathways by source for MIR3198-2 Gene

Interacting Proteins for MIR3198-2 Gene

Gene Ontology (GO) - Biological Process for MIR3198-2 Gene


No data available for SIGNOR curated interactions for MIR3198-2 Gene

Drugs & Compounds for MIR3198-2 Gene

No Compound Related Data Available

Transcripts for MIR3198-2 Gene

mRNA/cDNA for MIR3198-2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3198-2 Gene

No ASD Table

Relevant External Links for MIR3198-2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3198-2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3198-2 Gene

genes like me logo Genes that share expression patterns with MIR3198-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3198-2 Gene

Orthologs for MIR3198-2 Gene

Evolution for MIR3198-2 Gene

Gene Tree for MIR3198-2 (if available)
Gene Tree for MIR3198-2 (if available)

No data available for Orthologs for MIR3198-2 Gene

Paralogs for MIR3198-2 Gene

No data available for Paralogs for MIR3198-2 Gene

Variants for MIR3198-2 Gene

Sequence variations from dbSNP and Humsavar for MIR3198-2 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1001221514 -- 54,231,107(-) T/C downstream_transcript_variant
rs1005511336 -- 54,232,310(-) T/C upstream_transcript_variant
rs1011358640 -- 54,233,314(-) T/C upstream_transcript_variant
rs1013153033 -- 54,232,784(-) A/C/G upstream_transcript_variant
rs1014153078 -- 54,231,126(-) AAAAAAAAAA/AAAAAAAAA/AAAAAAAAAAA downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3198-2 Gene

Variant ID Type Subtype PubMed ID
nsv509467 CNV insertion 20534489
nsv832419 CNV loss 17160897
nsv832420 CNV loss 17160897
nsv976626 CNV duplication 23825009

Additional Variant Information for MIR3198-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3198-2 Gene

Disorders for MIR3198-2 Gene

Additional Disease Information for MIR3198-2

No disorders were found for MIR3198-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3198-2 Gene

Publications for MIR3198-2 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 58
  3. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 58
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3198-2 Gene

Sources for MIR3198-2 Gene

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