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Aliases for MIR3180-5 Gene

Subcategory (RNA class) for MIR3180-5 Gene


Quality Score for this RNA gene is


Aliases for MIR3180-5 Gene

  • MicroRNA 3180-5 2 3 5
  • Hsa-Mir-3180-5 3
  • Mir-3180-5 3

External Ids for MIR3180-5 Gene

Previous GeneCards Identifiers for MIR3180-5 Gene

  • GC16U901277
  • GC16M002188
  • GC16M002189
  • GC16M002190

Summaries for MIR3180-5 Gene

Entrez Gene Summary for MIR3180-5 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3180-5 Gene

MIR3180-5 (MicroRNA 3180-5) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3180-5 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3180-5 Gene

Genomics for MIR3180-5 Gene

GeneHancer (GH) Regulatory Elements for MIR3180-5 Gene

Promoters and enhancers for MIR3180-5 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I002134 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 +0.2 244 2.2 HDGF PKNOX1 SIN3A ZNF48 ZNF121 GLIS2 ELK1 ZNF143 ATF7 SP3 PKD1 GC16P002180 GC16P002200 GC16P002201 GC16P002203 MIR3180-5 PIR59583 GC16P002202 ENSG00000261123
GH16I002140 Enhancer 1.1 Ensembl ENCODE 0.8 -4.6 -4612 0.7 HDGF ARNT ARID4B ZNF2 ZNF48 ZNF121 ARID2 ZNF143 ATF7 NCOA1 RAB26 TBL3 KCTD5 ENSG00000261207 MLST8 MIR3180-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3180-5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3180-5 Gene

Genomic Locations for MIR3180-5 Gene
153 bases
Minus strand

Genomic View for MIR3180-5 Gene

Genes around MIR3180-5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3180-5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3180-5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3180-5 Gene

Proteins for MIR3180-5 Gene

Post-translational modifications for MIR3180-5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3180-5 Gene

Domains & Families for MIR3180-5 Gene

Gene Families for MIR3180-5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3180-5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3180-5 Gene

Function for MIR3180-5 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3180-5 Gene

Localization for MIR3180-5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3180-5 Gene

Pathways & Interactions for MIR3180-5 Gene

SuperPathways for MIR3180-5 Gene

No Data Available

Interacting Proteins for MIR3180-5 Gene

Gene Ontology (GO) - Biological Process for MIR3180-5 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR3180-5 Gene

Drugs & Compounds for MIR3180-5 Gene

No Compound Related Data Available

Transcripts for MIR3180-5 Gene

mRNA/cDNA for MIR3180-5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3180-5 Gene

No ASD Table

Relevant External Links for MIR3180-5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3180-5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3180-5 Gene

genes like me logo Genes that share expression patterns with MIR3180-5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3180-5 Gene

Orthologs for MIR3180-5 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR3180-5 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia -- 34
  • 49 (a)
Species where no ortholog for MIR3180-5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR3180-5 Gene

Gene Tree for MIR3180-5 (if available)
Gene Tree for MIR3180-5 (if available)

Paralogs for MIR3180-5 Gene

No data available for Paralogs for MIR3180-5 Gene

Variants for MIR3180-5 Gene

Sequence variations from dbSNP and Humsavar for MIR3180-5 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs560049593 conflicting-interpretations-of-pathogenicity, not specified 2,135,583(-) G/T downstream_transcript_variant
rs972113626 conflicting-interpretations-of-pathogenicity, not specified 2,135,476(-) G/A
rs867790304 likely-benign, not specified 2,135,884(-) C/T downstream_transcript_variant
rs886038369 likely-benign, not specified 2,135,508(-) G/A downstream_transcript_variant
rs1016465177 uncertain-significance, not specified 2,135,756(-) G/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3180-5 Gene

Variant ID Type Subtype PubMed ID
dgv4859n54 CNV loss 21841781
dgv4861n54 CNV loss 21841781
esv2422427 CNV duplication 17116639
esv26637 CNV loss 19812545
nsv1052260 CNV gain 25217958
nsv457349 CNV loss 19166990
nsv471072 CNV loss 18288195
nsv571190 CNV loss 21841781
nsv827505 CNV gain 20364138
nsv827507 CNV gain 20364138
nsv9332 CNV loss 18304495
nsv984250 CNV duplication 23825009

Additional Variant Information for MIR3180-5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3180-5 Gene

Disorders for MIR3180-5 Gene

Additional Disease Information for MIR3180-5

No disorders were found for MIR3180-5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3180-5 Gene

Publications for MIR3180-5 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton CJ … Gunaratne PH (PloS one 2010) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3180-5 Gene

Sources for MIR3180-5 Gene

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