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MIR3167 Gene(RNA Gene)

MicroRNA 3167

GCID:
GC11M126988
GIFtS:
15
Genes Participants
UDN Logo

Aliases for MIR3167 Gene

Subcategory (RNA class) for MIR3167 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3167 Gene

  • MicroRNA 3167 2 3 5
  • Hsa-Mir-3167 3

External Ids for MIR3167 Gene

ORGUL Members for MIR3167 Gene

Previous GeneCards Identifiers for MIR3167 Gene

  • GC11U901564
  • GC11M126858

Summaries for MIR3167 Gene

Entrez Gene Summary for MIR3167 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3167 Gene

MIR3167 (MicroRNA 3167) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3167 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3167 Gene

Genomics for MIR3167 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for MIR3167 Gene

Promoters and enhancers for MIR3167 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11I126970 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.4 +19.4 19414 0.2 CTCF EGR1 KIRREL3 LOC105369558 ENSG00000254938 KIRREL3-AS2 MIR3167
GH11I126971 Enhancer 0.6 ENCODE dbSUPER 0.4 +18.5 18522 0.2 CTCF RAD21 LOC105369558 KIRREL3-AS2 ENSG00000254938 KIRREL3 MIR3167
GH11I126969 Enhancer 0.5 ENCODE dbSUPER 0.4 +19.1 19122 0.2 CTCF LOC105369558 ENSG00000254938 KIRREL3-AS2 KIRREL3 MIR3167
GH11I126948 Enhancer 0.6 ENCODE dbSUPER 0.3 +39.2 39151 1.6 CTCF JUND LOC105369558 KIRREL3-AS3 KIRREL3 KIRREL3-AS2 GC11P126941 MIR3167
GH11I126983 Enhancer 0.2 dbSUPER 0.8 +4.1 4098 1.4 MIR3167 GC11M126983 KIRREL3 KIRREL3-AS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3167 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3167 Gene

Genomic Locations for MIR3167 Gene
chr11:126,988,458-126,988,542
(GRCh38/hg38)
Size:
85 bases
Orientation:
Minus strand
chr11:126,858,354-126,858,438
(GRCh37/hg19)

Genomic View for MIR3167 Gene

Genes around MIR3167 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3167 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3167 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR3167 Gene

ORGUL Member Location for MIR3167 Gene

ORGUL Member Location for MIR3167 gene

Proteins for MIR3167 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR3167 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3167 Gene

Domains & Families for MIR3167 Gene

Gene Families for MIR3167 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3167: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3167 Gene

Function for MIR3167 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3167 Gene

Localization for MIR3167 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3167 Gene

Pathways & Interactions for MIR3167 Gene

SuperPathways for MIR3167 Gene

PathCards logo More details on SuperPathways for MIR3167
No Data Available

Interacting Proteins for MIR3167 Gene

Gene Ontology (GO) - Biological Process for MIR3167 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3167 Gene

Drugs & Compounds for MIR3167 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR3167 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MIR3167 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3167 Gene

No ASD Table

Relevant External Links for MIR3167 Gene

GeneLoc Exon Structure for
MIR3167
ECgene alternative splicing isoforms for
MIR3167

Expression for MIR3167 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3167 Gene

mRNA expression in normal human tissues for MIR3167 Gene
mRNA expression by GTEx for MIR3167 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3167 Gene:

MIR3167
genes like me logo Genes that share expression patterns with MIR3167: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3167 Gene

Orthologs for MIR3167 Gene

Evolution for MIR3167 Gene

ENSEMBL:
Gene Tree for MIR3167 (if available)
TreeFam:
Gene Tree for MIR3167 (if available)

No data available for Orthologs for MIR3167 Gene

Paralogs for MIR3167 Gene

No data available for Paralogs for MIR3167 Gene

Variants for MIR3167 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for MIR3167 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000597118 -- 126,989,495(-) C/T upstream_transcript_variant
rs1004781054 -- 126,989,230(-) C/T upstream_transcript_variant
rs1004786718 -- 126,989,127(-) T/C upstream_transcript_variant
rs1004838929 -- 126,989,420(-) G/A upstream_transcript_variant
rs1008268743 -- 126,988,607(-) G/A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3167 Gene

Variant ID Type Subtype PubMed ID
esv2761719 CNV gain 21179565
nsv539 CNV insertion 18451855

Additional Variant Information for MIR3167 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3167

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3167 Gene

Disorders for MIR3167 Gene

Additional Disease Information for MIR3167

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MIR3167 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3167 Gene

Publications for MIR3167 Gene

  1. Genomewide pharmacogenomic study of metabolic side effects to antipsychotic drugs. (PMID: 20195266) Adkins DE … van den Oord EJ (Molecular psychiatry 2011) 3 58
  2. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton CJ … Gunaratne PH (PloS one 2010) 3 58
  3. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 58
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3167 Gene

Sources for MIR3167 Gene

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