microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR3164 Gene

Data sources for MIR3164 Gene:

RNA type for MIR3164 Gene

miRNA

Aliases for MIR3164 Gene

External Ids for MIR3164 Gene

Previous GeneCards Identifiers for MIR3164 Gene

  • GC11U901687
  • GC11P068850

Summaries for MIR3164 Gene

Entrez Gene Summary for MIR3164 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3164 Gene

MIR3164 (MicroRNA 3164) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3164 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR3164 Gene

Genomics for MIR3164 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR3164 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J069078 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.1 -3075 2.6 MAX TBP POLR2A NFE2L2 EP300 piR-54561 TPCN2 IGHMBP2 MIR3164 ENSG00000287725 SMIM38
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3164 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR3164 Gene

Latest Assembly
chr11:69,083,176-69,083,258
(GRCh38/hg38)
Size:
83 bases
Orientation:
Plus strand

Previous Assembly
chr11:68,850,644-68,850,726
(GRCh37/hg19 by Entrez Gene)
Size:
83 bases
Orientation:
Plus strand

chr11:68,850,644-68,850,726
(GRCh37/hg19 by Ensembl)
Size:
83 bases
Orientation:
Plus strand

Genomic View for MIR3164 Gene

Genes around MIR3164 on UCSC Golden Path with GeneCards custom track
MIR3164 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR3164 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3164 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3164 Gene

Proteins for MIR3164 Gene

Post-translational modifications for MIR3164 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3164 Gene

Domains & Families for MIR3164 Gene

Gene Families for MIR3164 Gene

HGNC:
genes like me logo Genes that share domains with MIR3164: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3164 Gene

Function for MIR3164 Gene

Phenotypes From GWAS Catalog for MIR3164 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3164 Gene

Localization for MIR3164 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3164 Gene

Pathways & Interactions for MIR3164 Gene

PathCards logo

SuperPathways for MIR3164 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR3164 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR3164 Gene

Drugs & Compounds for MIR3164 Gene

No Compound Related Data Available

Transcripts for MIR3164 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR3164 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075E7C6_9606 precursor_RNA 83 4

RefSeq: NR_036122,

Ensembl: ENST00000581178 (view in UCSC) ,

miRBase: MI0014194,

ENA: LM611019.1:1..83:precursor_RNA,

URS000042E8CC_9606 miRNA 22 3

RefSeq: NR_036122,

miRBase: MIMAT0015038,

ENA: LM381661.1:1..22:ncRNA, LM611019.1:10..31:ncRNA,

MIR3164 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3164 Gene

No ASD Table

Relevant External Links for MIR3164 Gene

GeneLoc Exon Structure for
MIR3164

No data available for mRNA/cDNA for MIR3164 Gene

Expression for MIR3164 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3164 Gene

genes like me logo Genes that share expression patterns with MIR3164: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3164 Gene

Orthologs for MIR3164 Gene

Evolution for MIR3164 Gene

ENSEMBL:
Gene Tree for MIR3164 (if available)
TreeFam:
Gene Tree for MIR3164 (if available)
Alliance of Genome Resources:
Additional Orthologs for MIR3164

No data available for Orthologs for MIR3164 Gene

Paralogs for MIR3164 Gene

No data available for Paralogs for MIR3164 Gene

Variants for MIR3164 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR3164 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIR3164 Gene

Variant ID Type Subtype PubMed ID
nsv468620 CNV loss 19166990
nsv469967 CNV loss 18288195
nsv555300 CNV loss 21841781
nsv555301 CNV loss 21841781
nsv825970 CNV gain 20364138
nsv832196 CNV loss 17160897

Additional Variant Information for MIR3164 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3164
Leiden Open Variation Database (LOVD)
MIR3164

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR3164 Gene

Disorders for MIR3164 Gene

Additional Disease Information for MIR3164

No disorders were found for MIR3164 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3164 Gene

Publications for MIR3164 Gene

  1. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR3164 Gene

Sources for MIR3164 Gene