MIR3162 Gene (RNA Gene)

MicroRNA 3162

GC11M059595
GIFtS:
13
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR3162 Gene

Subcategory (RNA class) for MIR3162 Gene

miRNA

Quality Score for this RNA gene is

14

Aliases for MIR3162 Gene

  • MicroRNA 3162 2 3 5
  • Hsa-Mir-3162 3
  • MIMAT0019213 53
  • MIMAT0015036 53
  • MI0014192 53
  • Mir-3162 3
  • MIR3162 2

External Ids for MIR3162 Gene

Previous GeneCards Identifiers for MIR3162 Gene

  • GC11U901712
  • GC11M059363

Summaries for MIR3162 Gene

Entrez Gene Summary for MIR3162 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3162 Gene

MIR3162 (MicroRNA 3162) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3162 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR3162 Gene

Genomics for MIR3162 Gene

GeneHancer (GH) Regulatory Elements for MIR3162 Gene

Promoters and enhancers for MIR3162 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J059610 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 -18.9 -18926 8.2 ZNF24 ZBTB40 SP1 SREBF1 FOXA1 SMARCE1 POLR2A CEBPZ USF2 ATF1 OSBP ENSG00000255008 STX3 MS4A2 ENSG00000255139 LOC101927226 MIR3162
GH11J059601 Enhancer 0.6 ENCODE 0.4 -6.8 -6845 0.2 FOXA1 RAD21 SP1 RXRA FOXA2 JUND ATF3 YY1 ZBTB33 GABPA ENSG00000255139 MIR3162 OSBP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3162 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3162 Gene

Genomic Locations for MIR3162 Gene
chr11:59,595,077-59,595,158
(GRCh38/hg38)
Size:
82 bases
Orientation:
Minus strand
chr11:59,362,550-59,362,631
(GRCh37/hg19)
Size:
82 bases
Orientation:
Minus strand

Genomic View for MIR3162 Gene

Genes around MIR3162 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3162 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3162 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR3162 Gene

Proteins for MIR3162 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR3162 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3162 Gene

Domains & Families for MIR3162 Gene

Gene Families for MIR3162 Gene

HGNC:
genes like me logo Genes that share domains with MIR3162: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3162 Gene

Function for MIR3162 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3162 Gene

Localization for MIR3162 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3162 Gene

Pathways & Interactions for MIR3162 Gene

PathCards logo

SuperPathways for MIR3162 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR3162 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3162 Gene

Drugs & Compounds for MIR3162 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR3162 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MIR3162 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(6) ENA transcripts :
(3) miRBase transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3162 Gene

No ASD Table

Relevant External Links for MIR3162 Gene

GeneLoc Exon Structure for
MIR3162
ECgene alternative splicing isoforms for
MIR3162

Expression for MIR3162 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3162 Gene

mRNA expression in normal human tissues for MIR3162 Gene
mRNA expression by GTEx for MIR3162 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3162 Gene:

MIR3162
genes like me logo Genes that share expression patterns with MIR3162: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3162 Gene

Orthologs for MIR3162 Gene

Evolution for MIR3162 Gene

ENSEMBL:
Gene Tree for MIR3162 (if available)
TreeFam:
Gene Tree for MIR3162 (if available)

No data available for Orthologs for MIR3162 Gene

Paralogs for MIR3162 Gene

No data available for Paralogs for MIR3162 Gene

Variants for MIR3162 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for MIR3162 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1001197222 -- 59,595,643(-) A/G upstream_transcript_variant
rs1001231736 -- 59,595,914(-) A/ upstream_transcript_variant
rs1001716572 -- 59,596,747(-) C/G upstream_transcript_variant
rs1002842171 -- 59,595,783(-) A/C upstream_transcript_variant
rs1002935591 -- 59,595,493(-) C/A/T upstream_transcript_variant

Additional Variant Information for MIR3162 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3162

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3162 Gene

Disorders for MIR3162 Gene

Additional Disease Information for MIR3162

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MIR3162 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3162 Gene

Publications for MIR3162 Gene

  1. mircoRNA-3162-3p is a potential biomarker to identify new infections in HIV-1-infected patients. (PMID: 29627523) Huang J … Liang H (Gene 2018) 3 56
  2. MiR-3162-3p Is a Novel MicroRNA That Exacerbates Asthma by Regulating β-Catenin. (PMID: 26959414) Fang C … Tan J (PloS one 2016) 3 56
  3. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 56
  4. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 56
  5. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 56

ExternalLinks

View latest publications for MIR3162 gene in Mastermind

Products for MIR3162 Gene

Sources for MIR3162 Gene