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MIR3160-1 Gene(RNA Gene)

MicroRNA 3160-1

GCID:
GC11M054230
GIFtS:
13
Genes Participants
UDN Logo

Aliases for MIR3160-1 Gene

Subcategory (RNA class) for MIR3160-1 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3160-1 Gene

  • MicroRNA 3160-1 2 3 5
  • Hsa-Mir-3160-1 3
  • Mir-3160-1 3

External Ids for MIR3160-1 Gene

ORGUL Members for MIR3160-1 Gene

Previous GeneCards Identifiers for MIR3160-1 Gene

  • GC11U901642
  • GC11M046473
  • GC11M047077
  • GC11M047922
  • GC11M050779
  • GC11M051574
  • GC11M052236
  • GC11M052896
  • GC11M053564

Summaries for MIR3160-1 Gene

Entrez Gene Summary for MIR3160-1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3160-1 Gene

MIR3160-1 (MicroRNA 3160-1) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3160-1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3160-1 Gene

Genomics for MIR3160-1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for MIR3160-1 Gene

Promoters and enhancers for MIR3160-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11I046450 Enhancer 0.5 ENCODE 550.8 +0.6 635 1.8 MEIS2 CTBP1 PKNOX1 HMBOX1 CUX1 PRDM1 SPI1 MIR3160-1 MIR3160-2 F2 ATG13 RPS10P19 AMBRA1
GH11I046455 Enhancer 0.9 Ensembl ENCODE 0.8 -4.7 -4702 2 MEIS2 MXI1 PKNOX1 MAZ HLF FEZF1 ZIC2 OSR2 ZFHX2 POLR2A CHRM4 ARHGAP1 ZNF408 MIR3160-1 AMBRA1
GH11I046591 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.1 -141.1 -141134 4 PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B SIN3A ZNF2 IRF4 YY1 AMBRA1 ENSG00000270060 KBTBD4 RPS10P19 DDB2 CELF1 ARFGAP2 ZNF408 MIR3160-1
GH11I046457 Enhancer 0.5 ENCODE 0.4 -6.0 -5986 0.6 ZNF664 CEBPB CEBPG FEZF1 CHRM4 ARHGAP1 ZNF408 ATG13 MIR3160-1 AMBRA1
GH11I046460 Enhancer 0.5 ENCODE 0.4 -9.8 -9818 1.8 SAP130 ZFP37 MAFK TEAD3 CHRM4 MDK DGKZ ATG13 LRP4 MIR3160-1 AMBRA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3160-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3160-1 Gene

Genomic Locations for MIR3160-1 Gene
chr11:46,451,805-46,451,889
(GRCh38/hg38)
Size:
85 bases
Orientation:
Minus strand
chr11:46,473,355-46,473,439
(GRCh37/hg19)

Genomic View for MIR3160-1 Gene

Genes around MIR3160-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3160-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3160-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR3160-1 Gene

ORGUL Member Location for MIR3160-1 Gene

ORGUL Member Location for MIR3160-1 gene

Proteins for MIR3160-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR3160-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3160-1 Gene

Domains & Families for MIR3160-1 Gene

Gene Families for MIR3160-1 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3160-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3160-1 Gene

Function for MIR3160-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3160-1 Gene

Localization for MIR3160-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3160-1 Gene

Pathways & Interactions for MIR3160-1 Gene

SuperPathways for MIR3160-1 Gene

PathCards logo More details on SuperPathways for MIR3160-1
No Data Available

Interacting Proteins for MIR3160-1 Gene

Gene Ontology (GO) - Biological Process for MIR3160-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3160-1 Gene

Drugs & Compounds for MIR3160-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR3160-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MIR3160-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3160-1 Gene

No ASD Table

Relevant External Links for MIR3160-1 Gene

GeneLoc Exon Structure for
MIR3160-1
ECgene alternative splicing isoforms for
MIR3160-1

Expression for MIR3160-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3160-1 Gene

Orthologs for MIR3160-1 Gene

Evolution for MIR3160-1 Gene

ENSEMBL:
Gene Tree for MIR3160-1 (if available)
TreeFam:
Gene Tree for MIR3160-1 (if available)

No data available for Orthologs for MIR3160-1 Gene

Paralogs for MIR3160-1 Gene

No data available for Paralogs for MIR3160-1 Gene

Variants for MIR3160-1 Gene

Sequence variations from dbSNP and Humsavar for MIR3160-1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000204113 -- 46,451,703(-) T/TT downstream_transcript_variant
rs1001521709 -- 46,453,243(-) G/C upstream_transcript_variant
rs1001721217 -- 46,452,996(-) A/G upstream_transcript_variant
rs1002312256 -- 46,451,485(-) T/C downstream_transcript_variant
rs1002578192 -- 46,452,362(-) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3160-1 Gene

Variant ID Type Subtype PubMed ID
esv3626183 CNV gain 21293372

Additional Variant Information for MIR3160-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3160-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3160-1 Gene

Disorders for MIR3160-1 Gene

Additional Disease Information for MIR3160-1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MIR3160-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3160-1 Gene

Publications for MIR3160-1 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 58
  3. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 58
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3160-1 Gene

Sources for MIR3160-1 Gene

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