MIR3160-1 Gene (RNA Gene)

MicroRNA 3160-1

GC11M061104
GIFtS:
10
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR3160-1 Gene

Subcategory (RNA class) for MIR3160-1 Gene

miRNA

Number of RNA Genes sources:

2 / 17

Aliases for MIR3160-1 Gene

  • MicroRNA 3160-1 2 3 5
  • Hsa-Mir-3160-1 2 3
  • MIR3160-1 2 5
  • MIMAT0019212 50
  • MIMAT0015034 50
  • Mir-3160-1 3
  • MI0014189 50

External Ids for MIR3160-1 Gene

Previous GeneCards Identifiers for MIR3160-1 Gene

  • GC11U901642
  • GC11M046473
  • GC11M047077
  • GC11M047922
  • GC11M055792
  • GC11M056001
  • GC11M056152
  • GC11M059674
  • GC11M050779
  • GC11M051574
  • GC11M052236
  • GC11M052896
  • GC11M053564
  • GC11M054230
  • GC11M054896
  • GC11M055594

Summaries for MIR3160-1 Gene

Entrez Gene Summary for MIR3160-1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3160-1 Gene

MIR3160-1 (MicroRNA 3160-1) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3160-1 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR3160-1 Gene

Genomics for MIR3160-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MIR3160-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J046450 Enhancer 0.8 Ensembl ENCODE 600.7 -0.2 -179 3.5 GATAD2A PRDM1 PKNOX1 CEBPA HMBOX1 CTBP1 TEAD1 WT1 SPI1 CEBPB MIR3160-1 MIR3160-2 CHRM4 ZNF408 ARHGAP1 F2 ATG13 HARBI1 piR-56497-020 AMBRA1
GH11J046455 Enhancer 0.8 Ensembl ENCODE 0.4 -5.1 -5111 4 PRDM1 ZIC2 PKNOX1 POLR2A EGR1 CEBPB OSR2 ZFHX2 CEBPG VEZF1 CHRM4 MDK DGKZ ARHGAP1 ZNF408 F2 ATG13 LRP4 MIR3160-1 piR-56497-020
GH11J046464 Enhancer 0.7 Ensembl ENCODE 0.4 -13.2 -13175 3.7 GATAD2A CEBPA CEBPB FOXA2 CEBPG TBP ZNF121 AMBRA1 MDK DGKZ CHRM4 C11orf49 ATG13 piR-56497-020 MIR3160-1
GH11J046460 Enhancer 0.6 Ensembl ENCODE 0.4 -10.0 -10003 2.2 PBX2 SAP130 MAFK DMAP1 TEAD3 ZFP37 CHRM4 MDK DGKZ ATG13 LRP4 piR-56497-020 MIR3160-1 AMBRA1
GH11J046463 Enhancer 0.2 ENCODE 0.4 -11.2 -11239 0.1 MDK DGKZ CHRM4 ATG13 piR-56497-020 MIR3160-1 AMBRA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3160-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR3160-1 Gene

Genomic Locations for MIR3160-1 Gene
chr11:46,451,805-46,451,889
(GRCh38/hg38)
Size:
85 bases
Orientation:
Minus strand
chr11:46,473,355-46,473,439
(GRCh37/hg19)
Size:
85 bases
Orientation:
Minus strand

Genomic View for MIR3160-1 Gene

Genes around MIR3160-1 on UCSC Golden Path with GeneCards custom track
MIR3160-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR3160-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3160-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR3160-1 Gene

Proteins for MIR3160-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR3160-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3160-1 Gene

Domains & Families for MIR3160-1 Gene

Gene Families for MIR3160-1 Gene

HGNC:
genes like me logo Genes that share domains with MIR3160-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3160-1 Gene

Function for MIR3160-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for MIR3160-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3160-1 Gene

Localization for MIR3160-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3160-1 Gene

Pathways & Interactions for MIR3160-1 Gene

PathCards logo

SuperPathways for MIR3160-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR3160-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR3160-1 Gene

Drugs & Compounds for MIR3160-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR3160-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR3160-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E12E_9606 precursor_RNA 85 5

HGNC: 38197,

RefSeq: NR_036117,

Ensembl: ENST00000577972 (view in UCSC) ,

miRBase: MI0014189,

ENA: LM611014.1:1..85:precursor_RNA,

URS0000046A2A_9606 miRNA 22 3

RefSeq: NR_036117, NR_036118,

miRBase: MIMAT0019212,

ENA: FR772751.1:1..22:ncRNA, FR772753.1:1..22:ncRNA, LM611014.1:13..34:ncRNA, LM611015.1:11..32:ncRNA,

URS0000086029_9606 miRNA 22 3

RefSeq: NR_036117, NR_036118,

miRBase: MIMAT0015034,

ENA: FR772750.1:1..22:ncRNA, FR772752.1:1..22:ncRNA, LM381657.1:1..22:ncRNA, LM611014.1:54..75:ncRNA, LM611015.1:52..73:ncRNA,

MIR3160-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR3160-1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3160-1 Gene

No ASD Table

Relevant External Links for MIR3160-1 Gene

GeneLoc Exon Structure for
MIR3160-1

Expression for MIR3160-1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR3160-1

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3160-1 Gene

Orthologs for MIR3160-1 Gene

Evolution for MIR3160-1 Gene

ENSEMBL:
Gene Tree for MIR3160-1 (if available)
TreeFam:
Gene Tree for MIR3160-1 (if available)

No data available for Orthologs for MIR3160-1 Gene

Paralogs for MIR3160-1 Gene

No data available for Paralogs for MIR3160-1 Gene

Variants for MIR3160-1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for MIR3160-1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR3160-1 Gene

Variant ID Type Subtype PubMed ID
esv3626183 CNV gain 21293372

Additional Variant Information for MIR3160-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3160-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR3160-1 Gene

Disorders for MIR3160-1 Gene

Additional Disease Information for MIR3160-1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MIR3160-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3160-1 Gene

Publications for MIR3160-1 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3
  3. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

ExternalLinks

View latest publications for MIR3160-1 gene in Mastermind

Products for MIR3160-1 Gene

Sources for MIR3160-1 Gene