microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR3156-1 Gene

Subcategory (RNA class) for MIR3156-1 Gene

miRNA

Number of RNA Genes sources:

2 / 17

Aliases for MIR3156-1 Gene

  • MicroRNA 3156-1 2 3 5
  • Hsa-Mir-3156-1 2 3
  • MIR3156-1 2 5
  • MIMAT0019209 50
  • MIMAT0015030 50
  • Mir-3156-1 3
  • MI0014184 50

External Ids for MIR3156-1 Gene

Previous GeneCards Identifiers for MIR3156-1 Gene

  • GC10U901387
  • GC10P045659

Summaries for MIR3156-1 Gene

Entrez Gene Summary for MIR3156-1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3156-1 Gene

MIR3156-1 (MicroRNA 3156-1) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3156-1 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR3156-1 Gene

Genomics for MIR3156-1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR3156-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J045159 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.7 -3.6 -3613 2.8 NR3C1 FOSL1 ZNF26 ATF3 FOS FAM21FP PARGP1 ALOX5 MIR3156-1 ANKRD30BP3 ENSG00000243349 OR13A1 ZNF22
GH10J045154 Enhancer 0.3 Ensembl 0.4 -9.2 -9214 0.4 ZNF610 PKNOX1 ANKRD30BP3 RSU1P2 ZNF22 MIR3156-1 ENSG00000243349 OR13A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3156-1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR3156-1 Gene

Genomic Locations for MIR3156-1 Gene
chr10:45,164,014-45,164,088
(GRCh38/hg38)
Size:
75 bases
Orientation:
Plus strand
chr10:45,659,462-45,659,536
(GRCh37/hg19)
Size:
75 bases
Orientation:
Plus strand

Genomic View for MIR3156-1 Gene

Genes around MIR3156-1 on UCSC Golden Path with GeneCards custom track
MIR3156-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR3156-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3156-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3156-1 Gene

Proteins for MIR3156-1 Gene

Post-translational modifications for MIR3156-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3156-1 Gene

Domains & Families for MIR3156-1 Gene

Gene Families for MIR3156-1 Gene

genes like me logo Genes that share domains with MIR3156-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3156-1 Gene

Function for MIR3156-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3156-1 Gene

Localization for MIR3156-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3156-1 Gene

Pathways & Interactions for MIR3156-1 Gene

PathCards logo

SuperPathways for MIR3156-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR3156-1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR3156-1 Gene

Drugs & Compounds for MIR3156-1 Gene

No Compound Related Data Available

Transcripts for MIR3156-1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR3156-1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B4BC_9606 precursor_RNA 75 5

HGNC: 38241,

RefSeq: NR_036112,

Ensembl: ENST00000579389 (view in UCSC) ,

miRBase: MI0014184,

ENA: LM611009.1:1..75:precursor_RNA,

URS0000064063_9606 miRNA 22 3

RefSeq: NR_036112, NR_036153, NR_036164,

miRBase: MIMAT0015030,

ENA: LM381653.1:1..22:ncRNA, LM611009.1:8..29:ncRNA, LM611043.1:9..30:ncRNA, LM611054.1:9..30:ncRNA,

URS000075D48C_9606 miRNA 21 3

RefSeq: NR_036112, NR_036153,

miRBase: MIMAT0019209,

ENA: LM611009.1:49..69:ncRNA, LM611043.1:50..70:ncRNA,

URS00004E827F_9606 miRNA 21 1

ENA: FR772743.1:1..21:ncRNA, FR772744.1:1..21:ncRNA, FR772745.1:1..21:ncRNA,

MIR3156-1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR3156-1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3156-1 Gene

No ASD Table

Relevant External Links for MIR3156-1 Gene

GeneLoc Exon Structure for
MIR3156-1

Expression for MIR3156-1 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3156-1 Gene

Orthologs for MIR3156-1 Gene

Evolution for MIR3156-1 Gene

ENSEMBL:
Gene Tree for MIR3156-1 (if available)
TreeFam:
Gene Tree for MIR3156-1 (if available)

No data available for Orthologs for MIR3156-1 Gene

Paralogs for MIR3156-1 Gene

No data available for Paralogs for MIR3156-1 Gene

Variants for MIR3156-1 Gene

Additional dbSNP identifiers (rs#s) for MIR3156-1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR3156-1 Gene

Variant ID Type Subtype PubMed ID
esv2750897 CNV loss 17911159
esv3623082 CNV gain 21293372
esv3891797 CNV gain 25118596
esv3891798 CNV gain 25118596
nsv831848 CNV gain 17160897

Additional Variant Information for MIR3156-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3156-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR3156-1 Gene

Disorders for MIR3156-1 Gene

Additional Disease Information for MIR3156-1

No disorders were found for MIR3156-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3156-1 Gene

Publications for MIR3156-1 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3
  3. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR3156-1 Gene

Sources for MIR3156-1 Gene