Aliases for MIR3142HG Gene

Subcategory (RNA class) for MIR3142HG Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for MIR3142HG Gene

  • MIR3142 Host Gene 2 3 5
  • MIR3142HG 2 5 165
  • NONHSAG042103.2 91
  • HSALNG0046250 164
  • MIR146A Host 3

External Ids for MIR3142HG Gene

Previous GeneCards Identifiers for MIR3142HG Gene

  • GC00U936474
  • GC05P160469

Summaries for MIR3142HG Gene

GeneCards Summary for MIR3142HG Gene

MIR3142HG (MIR3142 Host Gene) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are Melatonin metabolism and effects.

Rfam classification for MIR3142HG Gene

Additional gene information for MIR3142HG Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR3142HG Gene

Genomics for MIR3142HG Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR3142HG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J160466 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.3 +33.9 33859 12.2 SP1 HNRNPL GATAD2A TFE3 SOX13 NFKBIZ POLR2A RCOR2 ZNF7 BACH1 MIR3142 piR-49097-084 MIR3142HG KT003585 KT003592 PTTG1 ATP10B
GH05J160438 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.6 607 2 GATAD2A CTCF TEAD4 PRDM10 NFKBIZ ZNF692 LARP7 ZNF143 RELA ZIC2 MIR3142HG SLU7 PTTG1 ZBED8 MN298230 ATP10B
GH05J160437 Promoter 0.8 Ensembl 600.7 -1.3 -1293 1 IKZF2 TRIM22 ARID3A RELB ZSCAN5C NBN ZFHX2 IKZF1 EBF1 TBX21 MIR3142HG lnc-PTTG1-4 PTTG1 ATP10B
GH05J160266 Enhancer 0.7 ENCODE 5.4 -171.8 -171825 1.4 GATAD2A CTCF TEAD4 RXRB CEBPA USF1 ESRRA YY1 MBD1 TEAD1 MIR3142HG LOC105377691 RF00017-5065 CCNJL FABP6
GH05J160902 Enhancer 0.5 Ensembl ENCODE dbSUPER 5.3 +466.2 466196 5 ATP10B MIR3142HG GABRB2 piR-61240-236 PTTG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3142HG on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR3142HG Gene

Genomic Locations for MIR3142HG Gene
chr5:160,438,594-160,493,464
(GRCh38/hg38)
Size:
54,871 bases
Orientation:
Plus strand

Genomic View for MIR3142HG Gene

Genes around MIR3142HG on UCSC Golden Path with GeneCards custom track
MIR3142HG in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR3142HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3142HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3142HG Gene

Proteins for MIR3142HG Gene

Post-translational modifications for MIR3142HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3142HG Gene

Domains & Families for MIR3142HG Gene

Gene Families for MIR3142HG Gene

genes like me logo Genes that share domains with MIR3142HG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3142HG Gene

Function for MIR3142HG Gene

Phenotypes From GWAS Catalog for MIR3142HG Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3142HG Gene

Localization for MIR3142HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3142HG Gene

Pathways & Interactions for MIR3142HG Gene

PathCards logo

SuperPathways for MIR3142HG Gene

genes like me logo Genes that share pathways with MIR3142HG: view

Pathways by source for MIR3142HG Gene

1 BioSystems pathway for MIR3142HG Gene

Gene Ontology (GO) - Biological Process for MIR3142HG Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035195 gene silencing by miRNA IEA --
genes like me logo Genes that share ontologies with MIR3142HG: view

No data available for Interacting Proteins and SIGNOR curated interactions for MIR3142HG Gene

Drugs & Compounds for MIR3142HG Gene

No Compound Related Data Available

Transcripts for MIR3142HG Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR3142HG Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008E3A4A_9606 lncRNA 2318 2

HGNC: 51944,

RefSeq: NR_132748,

URS00001C68D8_9606 lncRNA 2301 2

Ensembl: ENST00000517927 (view in UCSC) ,

LNCipedia: MIR3142HG:2,

URS0000D607AD_9606 lncRNA 2204 2

Ensembl: ENST00000642173 (view in UCSC) ,

LNCipedia: MIR3142HG:4,

URS00008B80BC_9606 lncRNA 2590 2

LNCipedia: MIR3142HG:1,

NONCODE: NONHSAT104852.2,

URS00009B821E_9606 lncRNA 2301 2

LncBook: HSALNT0096957,

NONCODE: NONHSAT203499.1,

MIR3142HG in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR3142HG Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3142HG Gene

No ASD Table

Relevant External Links for MIR3142HG Gene

GeneLoc Exon Structure for
MIR3142HG

Expression for MIR3142HG Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR3142HG

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3142HG Gene

Orthologs for MIR3142HG Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR3142HG Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-146a 31
  • 99 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia cfa-mir-146a 31
  • 97 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Mir146 31
  • 92 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia bta-mir-146a 31
  • 92 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia mdo-mir-146a 31
  • 91 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia oan-mir-146a 31
  • 58 (a)
OneToOne
Chicken
(Gallus gallus)
Aves gga-mir-146a 31
  • 79 (a)
OneToOne
Zebrafish
(Danio rerio)
Actinopterygii dre-mir-146b 31
  • 65 (a)
OneToOne
Species where no ortholog for MIR3142HG was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for MIR3142HG Gene

ENSEMBL:
Gene Tree for MIR3142HG (if available)
TreeFam:
Gene Tree for MIR3142HG (if available)

Paralogs for MIR3142HG Gene

No data available for Paralogs for MIR3142HG Gene

Variants for MIR3142HG Gene

Additional dbSNP identifiers (rs#s) for MIR3142HG Gene

Additional Variant Information for MIR3142HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3142HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3142HG Gene

Disorders for MIR3142HG Gene

No disorders were found for MIR3142HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3142HG Gene

Publications for MIR3142HG Gene

  1. Evaluation of Genetic Variants in MIR3142HG in Susceptibility to and Prognosis of Glioma. (PMID: 31513017) Guo X … Song J (American journal of clinical oncology 2020) 3
  2. NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. (PMID: 16885212) Taganov KD … Baltimore D (Proceedings of the National Academy of Sciences of the United States of America 2006) 3

Products for MIR3142HG Gene

Sources for MIR3142HG Gene