Aliases for MIR3138 Gene
Subcategory (RNA class) for MIR3138 Gene
miRNA
Quality Score for this RNA gene is
8
External Ids for MIR3138 Gene
- HGNC: 38341
- Entrez Gene: 100423011
- Ensembl: ENSG00000264931
- miRBase: hsa-mir-3138
ORGUL Members for MIR3138 Gene
Previous GeneCards Identifiers for MIR3138 Gene
- GC04U901261
- GC04M009413
Summaries for MIR3138 Gene
-
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
GeneCards Summary for MIR3138 Gene
MIR3138 (MicroRNA 3138) is an RNA Gene, and is affiliated with the miRNA class.
Additional gene information for MIR3138 Gene
No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3138 Gene
Genomics for MIR3138 Gene
GeneHancer (GH) Regulatory Elements for MIR3138 Gene
Promoters and enhancers for MIR3138 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH04I010074 | Enhancer | 0.7 | dbSUPER | 550.8 | +0.5 | 523 | 7 | CTCF RXRA JUN ZMYM3 RAD21 RARA FOSL1 POLR2A IKZF1 ZFP36 | MIR3138 SLC2A9 RNA5SP155 WDR1 ENSG00000261490 GC04M010074 | |
| GH04I010091 | Enhancer | 1.5 | VISTA Ensembl ENCODE dbSUPER | 0.3 | -23.3 | -23307 | 20.6 | FOXA2 ZSCAN4 EGR1 ZNF366 SCRT2 ZNF548 ATF7 FOS IKZF2 RUNX3 | GC04M010099 SLC2A9 ENSG00000261490 LOC105374476 PIRC17 WDR1 MIR3138 | |
| GH04I010087 | Enhancer | 0.7 | ENCODE dbSUPER | 0.4 | -10.4 | -10442 | 3.2 | CTCF POLR2A ZNF143 ZIC2 RAD21 | SLC2A9 RNA5SP155 WDR1 ENSG00000261490 LOC105374476 GC04M010099 MIR3138 | |
| GH04I010084 | Enhancer | 0.5 | ENCODE dbSUPER | 0.4 | -6.5 | -6524 | 1.7 | NFATC1 | SLC2A9 WDR1 RNA5SP155 ENSG00000261490 LOC105374476 MIR3138 GC04M010099 | |
| GH04I010081 | Enhancer | 0.2 | dbSUPER | 0.8 | -4.2 | -4211 | 2.5 | SLC2A9 WDR1 RNA5SP155 ENSG00000261490 MIR3138 GC04M010099 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around MIR3138 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for MIR3138 Gene
Genomic Locations for MIR3138 Gene
- chr4:10,078,611-10,078,692
- (GRCh38/hg38)
- Size:
- 82 bases
- Orientation:
- Minus strand
- chr4:10,080,235-10,080,316
- (GRCh37/hg19)
Genomic View for MIR3138 Gene
Genes around MIR3138 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 4p16.1 by Ensembl
- 4p16.1 by Entrez Gene
- 4p16.1 by HGNC
MIR3138 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for MIR3138 Gene
ORGUL Member Location for MIR3138 Gene
Proteins for MIR3138 Gene
Post-translational modifications for MIR3138 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for MIR3138
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for MIR3138
- Origene Custom Protein Services for MIR3138
- Search GeneTex for Proteins for MIR3138
No data available for DME Specific Peptides for MIR3138 Gene
Domains & Families for MIR3138 Gene
Gene Families for MIR3138 Gene
- HGNC:
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3138 Gene
Function for MIR3138 Gene
Phenotypes From GWAS Catalog for MIR3138 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for MIR3138
-
- Search ViGene Biosciences for MIR3138
CRISPR Products
- Browse CRISPR knockouts for MIR3138
- Applied Biological Materials CRISPR for MIR3138
-
Vectors and viruses for KO, Activation, Repression, and more
Inhibitory RNA Products
- Search ViGene Biosciences for MIR3138
Clone Products
- GenScript: Custom all cDNA clones Services for MIR3138
- VectorBuilder custom plasmid, inducible vectors for MIR3138
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MIR3138
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for MIR3138
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3138 Gene
Localization for MIR3138 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3138 Gene
Transcripts for MIR3138 Gene
mRNA/cDNA for MIR3138 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for MIR3138
- Applied Biological Materials CRISPR for MIR3138
-
Vectors and viruses for KO, Activation, Repression, and more
Inhibitory RNA Products
- Search ViGene Biosciences for MIR3138
Clone Products
- GenScript: Custom all cDNA clones Services for MIR3138
- VectorBuilder custom plasmid, inducible vectors for MIR3138
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MIR3138
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for MIR3138
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for MIR3138 Gene
NURSA nuclear receptor signaling pathways regulating expression of MIR3138 Gene:
MIR3138Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3138 Gene
Orthologs for MIR3138 Gene
No data available for Orthologs for MIR3138 Gene
Paralogs for MIR3138 Gene
No data available for Paralogs for MIR3138 Gene
Variants for MIR3138 Gene
| SNP ID | Clin | Chr 04 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000977881 | -- | 10,079,387(-) | C/T | upstream_transcript_variant | |
| rs1001928505 | -- | 10,080,660(-) | C/T | upstream_transcript_variant | |
| rs1001999901 | -- | 10,079,455(-) | T/C | upstream_transcript_variant | |
| rs1002382427 | -- | 10,080,516(-) | A/T | upstream_transcript_variant | |
| rs1003626895 | -- | 10,078,668(-) | G/T | non_coding_transcript_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv5117n100 | CNV | gain | 25217958 |
| esv2752052 | CNV | gain | 17911159 |
| esv2759222 | CNV | gain+loss | 17122850 |
| esv3599589 | CNV | gain | 21293372 |
| esv3599598 | CNV | gain | 21293372 |
| nsv1005698 | CNV | gain | 25217958 |
| nsv1013487 | CNV | gain | 25217958 |
| nsv1014335 | CNV | gain | 25217958 |
| nsv428438 | CNV | gain | 18775914 |
| nsv469621 | CNV | loss | 16826518 |
| nsv829857 | CNV | gain | 17160897 |
Additional Variant Information for MIR3138 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- MIR3138
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3138 Gene
Disorders for MIR3138 Gene
Additional Disease Information for MIR3138
No disorders were found for MIR3138 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3138 Gene
Publications for MIR3138 Gene
- MicroRNA expression profiles in pediatric dysembryoplastic neuroepithelial tumors. (PMID: 26698155) Braoudaki M … Kanavakis E (Medical oncology (Northwood, London, England) 2016) 3 58
- miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
- Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton CJ … Gunaratne PH (PloS one 2010) 3 58
- Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 58
- miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58
Products for MIR3138 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Human Proteins and Enzymes
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for MIR3138
- Origene Custom Protein Services for MIR3138
- Browse OriGene Inhibitory RNA Products For MIR3138
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for MIR3138
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For MIR3138
- GenScript: Custom all cDNA clones Services for MIR3138
- GenScript Custom Purified and Recombinant Proteins Services for MIR3138
- GenScript Custom Assay Services for MIR3138
- GenScript Custom overexpressing Cell Line Services for MIR3138
- Browse GenScript CRISPR for MIR3138
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
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- Plasmid Preparation
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- Browse Sino Biological cDNA Clones
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- Sino Biological Transfection Reagent
- Sino Biological Anti-His Tag Antibody
- Browse Antibodies at Cloud-Clone Corp.
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- Browse Assay Kits at Cloud-Clone Corp.
- Browse Knockouts at Cloud-Clone Corp.
- Browse Knockins at Cloud-Clone Corp.
- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for MIR3138
- VectorBuilder custom plasmid, inducible vectors for MIR3138
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MIR3138
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for MIR3138
- Search GeneTex for Proteins for MIR3138
- Search ViGene Biosciences for MIR3138
Sources for MIR3138 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
