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Aliases for MIR3129 Gene

Subcategory (RNA class) for MIR3129 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3129 Gene

  • MicroRNA 3129 2 3 5
  • Hsa-Mir-3129 3
  • Mir-3129 3

External Ids for MIR3129 Gene

Previous GeneCards Identifiers for MIR3129 Gene

  • GC02U902089
  • GC02M189997

Summaries for MIR3129 Gene

Entrez Gene Summary for MIR3129 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3129 Gene

MIR3129 (MicroRNA 3129) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3129 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3129 Gene

Genomics for MIR3129 Gene

GeneHancer (GH) Regulatory Elements for MIR3129 Gene

Promoters and enhancers for MIR3129 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I189128 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.8 +2.7 2697 4.7 JUND PRDM6 POLR2A ZNF384 ZNF18 COL5A2 LOC100420666 MIR3129 ENSG00000228073
GH02I189142 Enhancer 0.9 ENCODE dbSUPER 0.4 -10.9 -10887 2.6 CTCF RAD21 ZNF143 SMC3 NR2F6 ZNF444 MIXL1 SMARCA5 ZNF654 RXRA COL5A2 LOC100420666 WDR75 MIR3129 GC02M189179 GC02M189180
GH02I189115 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +16.4 16429 2.2 CTCF ZFHX2 HLF MNT EGR2 COL5A2 LOC100420666 WDR75 MIR3129 ENSG00000228073
GH02I189149 Enhancer 0.9 ENCODE dbSUPER 0.4 -18.9 -18930 5 NCOA3 PKNOX1 CEBPB REST DPF2 CEBPG FOXA1 SP1 ZNF217 JUND COL5A2 WDR75 MIR3129 GC02M189179 GC02M189180
GH02I189175 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -45.2 -45218 5.4 CTCF PKNOX1 MAX SIN3A REST RAD21 ATF2 YY1 SP1 POLR2A GC02M189180 GC02M189179 WDR75 LOC100420666 COL5A2 COL3A1 DIRC1 MIR3129
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3129 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3129 Gene

Genomic Locations for MIR3129 Gene
chr2:189,133,036-189,133,111
(GRCh38/hg38)
Size:
76 bases
Orientation:
Minus strand
chr2:189,997,762-189,997,837
(GRCh37/hg19)

Genomic View for MIR3129 Gene

Genes around MIR3129 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3129 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3129 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3129 Gene

ORGUL Member Location for MIR3129 Gene

ORGUL Member Location for MIR3129 gene

Proteins for MIR3129 Gene

Post-translational modifications for MIR3129 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3129 Gene

Domains & Families for MIR3129 Gene

Gene Families for MIR3129 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3129: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3129 Gene

Function for MIR3129 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3129 Gene

Localization for MIR3129 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3129 Gene

Pathways & Interactions for MIR3129 Gene

SuperPathways for MIR3129 Gene

No Data Available

Interacting Proteins for MIR3129 Gene

Gene Ontology (GO) - Biological Process for MIR3129 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3129 Gene

Drugs & Compounds for MIR3129 Gene

No Compound Related Data Available

Transcripts for MIR3129 Gene

mRNA/cDNA for MIR3129 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3129 Gene

No ASD Table

Relevant External Links for MIR3129 Gene

GeneLoc Exon Structure for
MIR3129
ECgene alternative splicing isoforms for
MIR3129

Expression for MIR3129 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3129 Gene:

MIR3129
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3129 Gene

Orthologs for MIR3129 Gene

Evolution for MIR3129 Gene

ENSEMBL:
Gene Tree for MIR3129 (if available)
TreeFam:
Gene Tree for MIR3129 (if available)

No data available for Orthologs for MIR3129 Gene

Paralogs for MIR3129 Gene

No data available for Paralogs for MIR3129 Gene

Variants for MIR3129 Gene

Sequence variations from dbSNP and Humsavar for MIR3129 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000342306 -- 189,135,009(-) A/G upstream_transcript_variant
rs1000500205 -- 189,135,106(-) A/G upstream_transcript_variant
rs1001570464 -- 189,133,601(-) A/C upstream_transcript_variant
rs1002169692 -- 189,133,948(-) T/G upstream_transcript_variant
rs1002767775 -- 189,132,552(-) A/G downstream_transcript_variant

Additional Variant Information for MIR3129 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3129

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3129 Gene

Disorders for MIR3129 Gene

Additional Disease Information for MIR3129

No disorders were found for MIR3129 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3129 Gene

Publications for MIR3129 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 58
  3. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton CJ … Gunaratne PH (PloS one 2010) 3 58
  4. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 58
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3129 Gene

Sources for MIR3129 Gene

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