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Aliases for MIR3123 Gene

Subcategory (RNA class) for MIR3123 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3123 Gene

  • MicroRNA 3123 2 3 5
  • Hsa-Mir-3123 3
  • Mir-3123 3

External Ids for MIR3123 Gene

Previous GeneCards Identifiers for MIR3123 Gene

  • GC01U902865
  • GC01P241295

Summaries for MIR3123 Gene

Entrez Gene Summary for MIR3123 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3123 Gene

MIR3123 (MicroRNA 3123) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3123 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3123 Gene

Genomics for MIR3123 Gene

GeneHancer (GH) Regulatory Elements for MIR3123 Gene

Promoters and enhancers for MIR3123 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I241134 Enhancer 0.4 FANTOM5 0.8 +2.5 2495 0.4 GABPB1 MIR3123 GC01P241223 RGS7
GH01I241156 Enhancer 0.8 ENCODE 0.3 +24.6 24555 1.3 KLF1 PKNOX1 FOXA2 JUN KLF17 RAD21 ZEB1 HIC1 GATA3 ZNF366 MIR3123 GC01P241223 RGS7
GH01I241191 Enhancer 0.7 ENCODE 0.2 +59.9 59944 1.4 FOXA2 RXRA MAX REST ZNF501 ZNF644 RAD21 NR2F2 GABPA YY1 GC01P241223 MIR3123 RGS7
GH01I241140 Enhancer 0.2 ENCODE 0.4 +9.4 9354 1.5 MIR3123 GC01P241223 RGS7
GH01I241138 Enhancer 0.2 FANTOM5 0.4 +6.7 6716 0.2 MIR3123 GC01P241223 RGS7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3123 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3123 Gene

Genomic Locations for MIR3123 Gene
chr1:241,132,272-241,132,346
(GRCh38/hg38)
Size:
75 bases
Orientation:
Plus strand
chr1:241,295,572-241,295,646
(GRCh37/hg19)

Genomic View for MIR3123 Gene

Genes around MIR3123 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3123 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3123 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3123 Gene

Proteins for MIR3123 Gene

Post-translational modifications for MIR3123 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3123 Gene

Domains & Families for MIR3123 Gene

Gene Families for MIR3123 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3123: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3123 Gene

Function for MIR3123 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3123 Gene

Localization for MIR3123 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3123 Gene

Pathways & Interactions for MIR3123 Gene

SuperPathways for MIR3123 Gene

No Data Available

Interacting Proteins for MIR3123 Gene

Gene Ontology (GO) - Biological Process for MIR3123 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3123 Gene

Drugs & Compounds for MIR3123 Gene

No Compound Related Data Available

Transcripts for MIR3123 Gene

mRNA/cDNA for MIR3123 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3123 Gene

No ASD Table

Relevant External Links for MIR3123 Gene

GeneLoc Exon Structure for
MIR3123
ECgene alternative splicing isoforms for
MIR3123

Expression for MIR3123 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3123 Gene:

MIR3123
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3123 Gene

Orthologs for MIR3123 Gene

Evolution for MIR3123 Gene

ENSEMBL:
Gene Tree for MIR3123 (if available)
TreeFam:
Gene Tree for MIR3123 (if available)

No data available for Orthologs for MIR3123 Gene

Paralogs for MIR3123 Gene

No data available for Paralogs for MIR3123 Gene

Variants for MIR3123 Gene

Sequence variations from dbSNP and Humsavar for MIR3123 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000493896 -- 241,131,629(+) G/A upstream_transcript_variant
rs1002441068 -- 241,131,441(+) G/T upstream_transcript_variant
rs1003894104 -- 241,131,511(+) T/C upstream_transcript_variant
rs1004355737 -- 241,130,972(+) G/A upstream_transcript_variant
rs1004723757 -- 241,132,029(+) A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3123 Gene

Variant ID Type Subtype PubMed ID
nsv517999 CNV loss 19592680
esv3589332 CNV gain 21293372

Additional Variant Information for MIR3123 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3123

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3123 Gene

Disorders for MIR3123 Gene

Additional Disease Information for MIR3123

No disorders were found for MIR3123 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3123 Gene

Publications for MIR3123 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3123 Gene

Sources for MIR3123 Gene

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