microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR3122 Gene

Subcategory (RNA class) for MIR3122 Gene

miRNA

Number of RNA Genes sources:

2 / 17

Aliases for MIR3122 Gene

  • MicroRNA 3122 2 3 5
  • Hsa-Mir-3122 2 3
  • MIR3122 2 5
  • MIMAT0014984 50
  • MI0014138 50
  • Mir-3122 3

External Ids for MIR3122 Gene

Previous GeneCards Identifiers for MIR3122 Gene

  • GC01U903076
  • GC01P212250

Summaries for MIR3122 Gene

Entrez Gene Summary for MIR3122 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3122 Gene

MIR3122 (MicroRNA 3122) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3122 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR3122 Gene

Genomics for MIR3122 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR3122 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J212077 Enhancer 0.8 Ensembl ENCODE 600.7 -0.3 -312 1 JUND PKNOX1 FOXJ2 NFE2 ZNF316 FOSL1 MAFG FOXA1 ATF3 FOS MIR3122 INTS7 DTL PACC1 LPGAT1-AS1 lnc-INTS7-2 PPP2R5A
GH01J212087 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 +11.7 11688 3.4 ZNF629 FOXA1 RELA IKZF2 ZNF501 ZNF239 ZNF600 SCRT2 EED DPF2 INTS7 DTL LPGAT1-AS1 PPP2R5A piR-35678-001 MIR3122
GH01J212070 Enhancer 0.6 Ensembl 0.4 -6.6 -6612 1.2 CTCF REST RAD21 TRIM22 ZNF592 SMC3 ARNT ZGPAT ZNF654 ZNF24 ENSG00000229832 SNORA16B INTS7 DTL ENSG00000212187 MIR3122 lnc-INTS7-2 PPP2R5A
GH01J212067 Enhancer 0.4 Ensembl 0.4 -9.9 -9912 2.6 NR2F2 JUN MAFK INTS7 DTL ENSG00000229832 SNORA16B PACC1 ENSG00000212187 LPGAT1 MIR3122 lnc-INTS7-2 PPP2R5A
GH01J212083 Enhancer 0.3 FANTOM5 0.4 +6.2 6159 0.3 PRDM1 LINC00467 INTS7 DTL MIR3122 piR-35678-001 PPP2R5A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR3122 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR3122 Gene

Genomic Locations for MIR3122 Gene
chr1:212,077,613-212,077,685
(GRCh38/hg38)
Size:
73 bases
Orientation:
Plus strand
chr1:212,250,955-212,251,027
(GRCh37/hg19)
Size:
73 bases
Orientation:
Plus strand

Genomic View for MIR3122 Gene

Genes around MIR3122 on UCSC Golden Path with GeneCards custom track
MIR3122 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR3122 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3122 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3122 Gene

Proteins for MIR3122 Gene

Post-translational modifications for MIR3122 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3122 Gene

Domains & Families for MIR3122 Gene

Gene Families for MIR3122 Gene

HGNC:
genes like me logo Genes that share domains with MIR3122: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR3122 Gene

Function for MIR3122 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3122 Gene

Localization for MIR3122 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3122 Gene

Pathways & Interactions for MIR3122 Gene

PathCards logo

SuperPathways for MIR3122 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR3122 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR3122 Gene

Drugs & Compounds for MIR3122 Gene

No Compound Related Data Available

Transcripts for MIR3122 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR3122 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D748_9606 precursor_RNA 73 5

HGNC: 38320,

RefSeq: NR_036068,

Ensembl: ENST00000577243 (view in UCSC) ,

miRBase: MI0014138,

ENA: LM610968.1:1..73:precursor_RNA,

URS000032AE90_9606 miRNA 22 3

RefSeq: NR_036068,

miRBase: MIMAT0014984,

ENA: LM381612.1:1..22:ncRNA, LM610968.1:10..31:ncRNA,

MIR3122 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR3122 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3122 Gene

No ASD Table

Relevant External Links for MIR3122 Gene

GeneLoc Exon Structure for
MIR3122

Expression for MIR3122 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3122 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR3122

genes like me logo Genes that share expression patterns with MIR3122: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3122 Gene

Orthologs for MIR3122 Gene

Evolution for MIR3122 Gene

ENSEMBL:
Gene Tree for MIR3122 (if available)
TreeFam:
Gene Tree for MIR3122 (if available)

No data available for Orthologs for MIR3122 Gene

Paralogs for MIR3122 Gene

No data available for Paralogs for MIR3122 Gene

Variants for MIR3122 Gene

Additional dbSNP identifiers (rs#s) for MIR3122 Gene

Additional Variant Information for MIR3122 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3122

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3122 Gene

Disorders for MIR3122 Gene

Additional Disease Information for MIR3122

No disorders were found for MIR3122 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3122 Gene

Publications for MIR3122 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3
  2. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark MS … Hayward NK (PloS one 2010) 3
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR3122 Gene

Sources for MIR3122 Gene