MIR30B Gene (RNA Gene)

MicroRNA 30b

GC08M134800
GIFtS:
18
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR30B Gene

Subcategory (RNA class) for MIR30B Gene

miRNA

Quality Score for this RNA gene is

17

Aliases for MIR30B Gene

  • MicroRNA 30b 2 3 5
  • Hsa-MiR-30b-3p 168 179
  • Hsa-MiR-30b-5p 168 179
  • MIMAT0000420 53
  • MIMAT0004589 53
  • Hsa-Mir-30b 3
  • MI0000441 53
  • Mir-30b 3
  • MIRN30B 3
  • RF00131 174
  • MIR30B 2

External Ids for MIR30B Gene

Previous HGNC Symbols for MIR30B Gene

  • MIRN30B

Previous GeneCards Identifiers for MIR30B Gene

  • GC08M135884

Summaries for MIR30B Gene

Entrez Gene Summary for MIR30B Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR30B Gene

MIR30B (MicroRNA 30b) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR30B include Medulloblastoma and Lymphoma, Hodgkin, Classic. Among its related pathways are MicroRNAs in cancer and miRNA targets in ECM and membrane receptors.

Rfam classification for MIR30B Gene

  • mir-30 microRNA precursor

Additional gene information for MIR30B Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR30B Gene

Genomics for MIR30B Gene

GeneHancer (GH) Regulatory Elements for MIR30B Gene

Promoters and enhancers for MIR30B Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH08J134799 Enhancer 1 Ensembl ENCODE 750.6 -1.8 -1794 5.2 SMARCE1 CREB1 HLF DACH1 ELF3 SP1 TFE3 CEBPG SMARCA4 ZNF24 MIR30B lnc-KHDRBS3-15 ENSG00000259820 MIR30D lnc-KHDRBS3-16 LOC102723694
GH08J134830 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.1 -31.4 -31374 4.4 SP1 ZBTB40 CTCF SREBF1 LCORL FOXA1 MLX RBPJ SMARCE1 POLR2A ENSG00000254028 LOC102723694 ZFAT ENSG00000259820 MIR30D MIR30B NONHSAG051359.2
GH08J134711 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 9.9 +87.4 87419 3.6 GTF3C2 SIN3A ZNF24 SP1 ZBTB40 SMARCE1 POLR2A USF2 HCFC1 MYC ZFAT MIR30B ENSG00000272456
GH08J134682 Enhancer 1.2 FANTOM5 ENCODE CraniofacialAtlas 11 +116.0 115988 3.6 CTCF HLF CEBPB MAX RAD21 ZNF652 ELF3 CEBPG ZNF644 IKZF1 ZFAT MIR30B ENSG00000272456 piR-61240-288
GH08J134754 Enhancer 1 Ensembl ENCODE 11.4 +46.2 46207 0.8 FOXA1 MLX RBPJ NR2F1 ATF1 NR2F6 CREB1 MIXL1 HLF RAD21 lnc-KHDRBS3-5 MIR30B MIR30D ENSG00000272456
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR30B on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR30B Gene

Genomic Locations for MIR30B Gene
chr8:134,800,520-134,800,607
(GRCh38/hg38)
Size:
88 bases
Orientation:
Minus strand
chr8:135,812,763-135,812,850
(GRCh37/hg19)
Size:
88 bases
Orientation:
Minus strand

Genomic View for MIR30B Gene

Genes around MIR30B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR30B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR30B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR30B Gene

Proteins for MIR30B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR30B Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR30B Gene

Domains & Families for MIR30B Gene

Gene Families for MIR30B Gene

HGNC:
genes like me logo Genes that share domains with MIR30B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR30B Gene

Function for MIR30B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for MIR30B Gene

Gene Ontology (GO) - Molecular Function for MIR30B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA 22387553
genes like me logo Genes that share ontologies with MIR30B: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR30B Gene

Localization for MIR30B Gene

Gene Ontology (GO) - Cellular Components for MIR30B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 26646931
GO:0016442 RISC complex IEA --
genes like me logo Genes that share ontologies with MIR30B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MIR30B Gene

Pathways & Interactions for MIR30B Gene

genes like me logo Genes that share pathways with MIR30B: view

Pathways by source for MIR30B Gene

1 BioSystems pathway for MIR30B Gene
1 KEGG pathway for MIR30B Gene

Gene Ontology (GO) - Biological Process for MIR30B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001934 positive regulation of protein phosphorylation IDA 28977001
GO:0010628 positive regulation of gene expression IDA 28977001
GO:0016525 negative regulation of angiogenesis IDA 28977001
GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway IDA 28977001
GO:0035195 gene silencing by miRNA IMP 23086751
genes like me logo Genes that share ontologies with MIR30B: view

No data available for SIGNOR curated interactions for MIR30B Gene

Drugs & Compounds for MIR30B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR30B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MIR30B Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(3) miRBase transcripts :
(2) LncBase transcripts :
(5) ENA transcripts :
(1) Rfam transcripts :
(2) TarBase transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR30B Gene

No ASD Table

Relevant External Links for MIR30B Gene

GeneLoc Exon Structure for
MIR30B
ECgene alternative splicing isoforms for
MIR30B

Expression for MIR30B Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR30B Gene

mRNA expression in normal human tissues for MIR30B Gene
mRNA expression by GTEx for MIR30B Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR30B Gene:

MIR30B
genes like me logo Genes that share expression patterns with MIR30B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR30B Gene

Orthologs for MIR30B Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR30B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia ptr-mir-30b 33
  • 100 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia cfa-mir-30b 33
  • 98 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia mdo-mir-30b 33
  • 96 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia bta-mir-30b 33
  • 90 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Mir30b 33
  • 84 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia oan-mir-30b 33
  • 66 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves gga-mir-30b 33
  • 85 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia aca-mir-30b 33
  • 86 (a)
 OneToOne
zebrafish
(Danio rerio)
 Actinopterygii dre-mir-30b 33
  • 61 (a)
 ManyToMany
Species where no ortholog for MIR30B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIR30B Gene

ENSEMBL:
Gene Tree for MIR30B (if available)
TreeFam:
Gene Tree for MIR30B (if available)

Paralogs for MIR30B Gene

No data available for Paralogs for MIR30B Gene

Variants for MIR30B Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for MIR30B Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1001367821 -- 134,801,433(-) T/A/C upstream_transcript_variant
rs1002199094 -- 134,802,516(-) A/T upstream_transcript_variant
rs1004004387 -- 134,800,050(-) T/C downstream_transcript_variant
rs1005015930 -- 134,801,465(-) T/C upstream_transcript_variant
rs1008558745 -- 134,800,778(-) G/C upstream_transcript_variant

Additional Variant Information for MIR30B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR30B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR30B Gene

Disorders for MIR30B Gene

MalaCards: The human disease database

(7) MalaCards diseases for MIR30B Gene - From: miR2Disease

- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIR30B

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with MIR30B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR30B Gene

Publications for MIR30B Gene

  1. MicroRNAs and target site screening reveals a pre-microRNA-30e variant associated with schizophrenia. (PMID: 20347265) Xu Y … Liu P (Schizophrenia research 2010) 3 43 56
  2. LncRNA MALAT1 potentiates autophagy‑associated cisplatin resistance by regulating the microRNA‑30b/autophagy‑related gene 5 axis in gastric cancer. (PMID: 30365113) Xi Z … Nan J (International journal of oncology 2019) 3 56
  3. A novel mechanism of synaptic and cognitive impairments mediated via microRNA-30b in Alzheimer's disease. (PMID: 30522932) Song Y … Chen C (EBioMedicine 2019) 3 56
  4. The Functional Mechanisms of miR-30b-5p in Acute Lung Injury in Children. (PMID: 30600796) Zhou T … Chen YL (Medical science monitor : international medical journal of experimental and clinical research 2019) 3 56
  5. MicroRNAs as possible biomarkers for screening of aortic aneurysms: a systematic review and validation study. (PMID: 29297231) Moushi A … Bashiardes E (Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals 2018) 3 56

ExternalLinks

View latest publications for MIR30B gene in Mastermind

Products for MIR30B Gene

Sources for MIR30B Gene