Aliases for MIR29B2CHG Gene

Subcategory (RNA class) for MIR29B2CHG Gene

lncRNA

Number of RNA Genes sources:

4 / 14

Aliases for MIR29B2CHG Gene

  • MIR29B2 And MIR29C Host Gene 2 3 5
  • MIR29B2CHG 2 168
  • Chromosome 1 Open Reading Frame 132 2
  • HSALNG0010130 167
  • NONHSAG004138 92
  • HSALNG0010128 167
  • HSALNG0010129 167
  • HSALNG0010132 167
  • NONHSAG004140 92
  • C1orf132 3

External Ids for MIR29B2CHG Gene

Previous HGNC Symbols for MIR29B2CHG Gene

  • C1orf132

Summaries for MIR29B2CHG Gene

GeneCards Summary for MIR29B2CHG Gene

MIR29B2CHG (MIR29B2 And MIR29C Host Gene) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for MIR29B2CHG Gene

  • mir-29 microRNA precursor

Additional gene information for MIR29B2CHG Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR29B2CHG Gene

Genomics for MIR29B2CHG Gene

GeneHancer (GH) Regulatory Elements for MIR29B2CHG Gene

Promoters and enhancers for MIR29B2CHG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J207747 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.4 +127.3 127349 8.1 ZBTB40 ZNF217 EP300 SIN3A TCF12 POLR2G USF1 SP1 GTF2E2 PHF8 CD46 lnc-CD34-7 CDCA4P4 MIR29B2CHG CR1L lnc-CD34-5
GH01J207816 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.1 +56.2 56204 12.5 RXRA ZNF217 EP300 CTCF ZSCAN5C SIN3A MYC TCF12 POLR2G SP1 lnc-CD46-6 CD46 CDCA4P4 MIR29B2CHG CD34 CR1 PLXNA2 CR1L LOC148696 piR-40549
GH01J207907 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 -31.1 -31131 5.6 CTCF ZIC2 ZBTB26 REST EZH2 ZNF341 SP2 ZBTB17 ZNF76 ZFHX2 CD34 ENSG00000285719 MIR29B2CHG C4BPA
GH01J207644 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.4 +233.5 233461 2.9 SIN3A NRF1 SP1 ZBTB5 ZIC2 AFF1 ZBTB26 TARDBP TOE1 CTBP1 CD46P1 CR1L C4BPA MIR29B2CHG CD46 CDCA4P3
GH01J207846 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 13 +29.2 29166 6.3 POLR2A KLF4 CTBP1 ZBTB26 NR2F2 FOXA2 ZNF316 GABPA FOS SAP130 CD46 MIR29B2CHG CD34 CR1L PLXNA2 CR1 lnc-CD46-7 lnc-CD46-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR29B2CHG on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR29B2CHG Gene

Genomic Locations for MIR29B2CHG Gene
chr1:207,761,719-207,879,115
(GRCh38/hg38)
Size:
117,397 bases
Orientation:
Minus strand
chr1:207,974,863-208,042,495
(GRCh37/hg19)
Size:
67,633 bases
Orientation:
Minus strand

Genomic View for MIR29B2CHG Gene

Genes around MIR29B2CHG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR29B2CHG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR29B2CHG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR29B2CHG Gene

Proteins for MIR29B2CHG Gene

Post-translational modifications for MIR29B2CHG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR29B2CHG Gene

Domains & Families for MIR29B2CHG Gene

Gene Families for MIR29B2CHG Gene

Suggested Antigen Peptide Sequences for MIR29B2CHG Gene

GenScript: Design optimal peptide antigens:
  • Chromosome 1 open reading frame 132 (Q5JTA6_HUMAN)
genes like me logo Genes that share domains with MIR29B2CHG: view

No data available for Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR29B2CHG Gene

Function for MIR29B2CHG Gene

Phenotypes From GWAS Catalog for MIR29B2CHG Gene

Phenotypes for MIR29B2CHG Gene

genes like me logo Genes that share phenotypes with MIR29B2CHG: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR29B2CHG Gene

Localization for MIR29B2CHG Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIR29B2CHG gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR29B2CHG Gene

Pathways & Interactions for MIR29B2CHG Gene

PathCards logo

SuperPathways for MIR29B2CHG Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MIR29B2CHG Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR29B2CHG Gene

Drugs & Compounds for MIR29B2CHG Gene

No Compound Related Data Available

Transcripts for MIR29B2CHG Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR29B2CHG Gene

No ASD Table

Relevant External Links for MIR29B2CHG Gene

GeneLoc Exon Structure for
MIR29B2CHG

Expression for MIR29B2CHG Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR29B2CHG

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR29B2CHG Gene

Orthologs for MIR29B2CHG Gene

Evolution for MIR29B2CHG Gene

ENSEMBL:
Gene Tree for MIR29B2CHG (if available)
TreeFam:
Gene Tree for MIR29B2CHG (if available)

No data available for Orthologs for MIR29B2CHG Gene

Paralogs for MIR29B2CHG Gene

No data available for Paralogs for MIR29B2CHG Gene

Variants for MIR29B2CHG Gene

Additional dbSNP identifiers (rs#s) for MIR29B2CHG Gene

Additional Variant Information for MIR29B2CHG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR29B2CHG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR29B2CHG Gene

Disorders for MIR29B2CHG Gene

Additional Disease Information for MIR29B2CHG

No disorders were found for MIR29B2CHG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR29B2CHG Gene

Publications for MIR29B2CHG Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 2 3 54
  2. Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) Schizophrenia Working Group of the Psychiatric Genomics Consortium (Nature 2014) 3 54
  3. Widespread microRNA repression by Myc contributes to tumorigenesis. (PMID: 18066065) Chang TC … Mendell JT (Nature genetics 2008) 3 54

Products for MIR29B2CHG Gene

Sources for MIR29B2CHG Gene