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Aliases for MIR200CHG Gene

Subcategory (RNA class) for MIR200CHG Gene

miRNA

Quality Score for this RNA gene is

13

Aliases for MIR200CHG Gene

  • MIR200C And MIR141 Host Gene 2 3 5
  • U47924.27 3

External Ids for MIR200CHG Gene

Previous GeneCards Identifiers for MIR200CHG Gene

  • GC12P007634
  • GC12P007409
  • GC12P007452
  • GC12P007497
  • GC12P007541
  • GC12P007582

Summaries for MIR200CHG Gene

GeneCards Summary for MIR200CHG Gene

MIR200CHG (MIR200C And MIR141 Host Gene) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR200CHG Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR200CHG Gene

Genomics for MIR200CHG Gene

GeneHancer (GH) Regulatory Elements for MIR200CHG Gene

Promoters and enhancers for MIR200CHG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J006923 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.8 -35.7 -35737 7.5 ZNF473 SP1 ZFX ELF3 CTCF ZNF148 NKRF POLR2A MLLT1 ZNF121 ATN1 ZNF384 LRRC23 CHD4 ENSG00000219410 SPSB2 ENSG00000247853 SCARNA12 EMG1 PHB2
GH12J006912 Enhancer 0.5 Ensembl dbSUPER 12 -50.7 -50703 0.2 ZNF121 ENO2 LRRC23 C12orf57 RNU7-1 SPSB2 RPL13P5 TPI1 USP5 PTPN6 MIR141
GH12J006940 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -9.5 -9546 25.9 MTA3 ZNF652 SP1 ZFX CC2D1A ELF3 CTCF ZKSCAN8 MNT CBFA2T2 EMG1 PTPN6 C12orf57 ZNF384 ENSG00000219410 ENSG00000247853 SPSB2 SCARNA12 NCAPD2 NOP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR200CHG on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR200CHG Gene

Genomic Locations for MIR200CHG Gene
chr12:6,963,204-6,964,452
(GRCh38/hg38)
Size:
1,249 bases
Orientation:
Plus strand
chr12:7,072,409-7,073,610
(GRCh37/hg19)
Size:
1,202 bases
Orientation:
Plus strand

Genomic View for MIR200CHG Gene

Genes around MIR200CHG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR200CHG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR200CHG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR200CHG Gene

Proteins for MIR200CHG Gene

Post-translational modifications for MIR200CHG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR200CHG Gene

Domains & Families for MIR200CHG Gene

Gene Families for MIR200CHG Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR200CHG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR200CHG Gene

Function for MIR200CHG Gene

Phenotypes From GWAS Catalog for MIR200CHG Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR200CHG Gene

Localization for MIR200CHG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR200CHG Gene

Pathways & Interactions for MIR200CHG Gene

PathCards logo

SuperPathways for MIR200CHG Gene

No Data Available

Interacting Proteins for MIR200CHG Gene

Gene Ontology (GO) - Biological Process for MIR200CHG Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR200CHG Gene

Drugs & Compounds for MIR200CHG Gene

No Compound Related Data Available

Transcripts for MIR200CHG Gene

mRNA/cDNA for MIR200CHG Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR200CHG Gene

No ASD Table

Relevant External Links for MIR200CHG Gene

GeneLoc Exon Structure for
MIR200CHG
ECgene alternative splicing isoforms for
MIR200CHG

Expression for MIR200CHG Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR200CHG Gene

Orthologs for MIR200CHG Gene

Evolution for MIR200CHG Gene

ENSEMBL:
Gene Tree for MIR200CHG (if available)
TreeFam:
Gene Tree for MIR200CHG (if available)

No data available for Orthologs for MIR200CHG Gene

Paralogs for MIR200CHG Gene

No data available for Paralogs for MIR200CHG Gene

Variants for MIR200CHG Gene

Sequence variations from dbSNP and Humsavar for MIR200CHG Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1001110105 -- 6,963,829(+) C/A intron_variant
rs1001273984 -- 6,964,080(+) G/A intron_variant
rs1001417130 -- 6,963,487(+) C/A/T intron_variant
rs1003107717 -- 6,961,571(+) G/A upstream_transcript_variant
rs1003424214 -- 6,961,433(+) C/T upstream_transcript_variant

Additional Variant Information for MIR200CHG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR200CHG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR200CHG Gene

Disorders for MIR200CHG Gene

Additional Disease Information for MIR200CHG

No disorders were found for MIR200CHG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR200CHG Gene

Publications for MIR200CHG Gene

  1. Characterization of long noncoding RNA and messenger RNA signatures in melanoma tumorigenesis and metastasis. (PMID: 28225791) Wang S … Han P (PloS one 2017) 2 3 58

Products for MIR200CHG Gene

Sources for MIR200CHG Gene

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