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Aliases for MIR1972-2 Gene

Subcategory (RNA class) for MIR1972-2 Gene


Quality Score for this RNA gene is


Aliases for MIR1972-2 Gene

  • MicroRNA 1972-2 2 3 5
  • Hsa-Mir-1972-2 3

External Ids for MIR1972-2 Gene

Previous GeneCards Identifiers for MIR1972-2 Gene

  • GC16U901222
  • GC16M015108
  • GC16P070064

Summaries for MIR1972-2 Gene

Entrez Gene Summary for MIR1972-2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1972-2 Gene

MIR1972-2 (MicroRNA 1972-2) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR1972-2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1972-2 Gene

Genomics for MIR1972-2 Gene

GeneHancer (GH) Regulatory Elements for MIR1972-2 Gene

Promoters and enhancers for MIR1972-2 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I070031 Enhancer 0.2 dbSUPER 550.8 +1.9 1928 2 MIR1972-2 NPIPB14P PDXDC2P-NPIPB14P CLEC18C GC16P070050 PDXDC2P
GH16I070025 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 0.8 -4.1 -4108 1.7 JUN CLEC18A NPIPB14P PDXDC2P-NPIPB14P WWP2 EXOSC6 MIR1972-2 PDXDC2P
GH16I070034 Enhancer 0.2 dbSUPER 0.8 +4.5 4476 1.2 LOC100506083 MIR1972-2 GC16P070050 PDXDC2P PDXDC2P-NPIPB14P
GH16I070010 Enhancer 0.4 ENCODE dbSUPER 0.4 -19.1 -19076 1.2 NPIPB14P ENSG00000252443 WWP2 PDXDC2P-NPIPB14P MIR1972-2 PDXDC2P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR1972-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR1972-2 Gene

Genomic Locations for MIR1972-2 Gene
77 bases
Plus strand

Genomic View for MIR1972-2 Gene

Genes around MIR1972-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1972-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1972-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1972-2 Gene

Proteins for MIR1972-2 Gene

Post-translational modifications for MIR1972-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1972-2 Gene

Domains & Families for MIR1972-2 Gene

Gene Families for MIR1972-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1972-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1972-2 Gene

Function for MIR1972-2 Gene

Phenotypes From GWAS Catalog for MIR1972-2 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1972-2 Gene

Localization for MIR1972-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR1972-2 Gene

Pathways & Interactions for MIR1972-2 Gene

SuperPathways for MIR1972-2 Gene

No Data Available

Interacting Proteins for MIR1972-2 Gene

Gene Ontology (GO) - Biological Process for MIR1972-2 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR1972-2 Gene

Drugs & Compounds for MIR1972-2 Gene

No Compound Related Data Available

Transcripts for MIR1972-2 Gene

mRNA/cDNA for MIR1972-2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1972-2 Gene

No ASD Table

Relevant External Links for MIR1972-2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR1972-2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1972-2 Gene

genes like me logo Genes that share expression patterns with MIR1972-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1972-2 Gene

Orthologs for MIR1972-2 Gene

Evolution for MIR1972-2 Gene

Gene Tree for MIR1972-2 (if available)
Gene Tree for MIR1972-2 (if available)

No data available for Orthologs for MIR1972-2 Gene

Paralogs for MIR1972-2 Gene

No data available for Paralogs for MIR1972-2 Gene

Variants for MIR1972-2 Gene

Sequence variations from dbSNP and Humsavar for MIR1972-2 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000907338 -- 70,029,626(+) G/C upstream_transcript_variant
rs1001442777 -- 70,030,267(+) G/C upstream_transcript_variant
rs1002397802 -- 70,028,655(+) G/A upstream_transcript_variant
rs1002450020 -- 70,028,995(+) G/A upstream_transcript_variant
rs1004365672 -- 70,028,572(+) AGTGAG/AGTGAGTGAG upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR1972-2 Gene

Variant ID Type Subtype PubMed ID
dgv111n111 CNV duplication 26073780
dgv11n31 CNV gain 19718026
dgv2738n100 CNV gain 25217958
dgv2742n100 CNV gain 25217958
dgv2746n100 CNV gain+loss 25217958
dgv2747n100 CNV loss 25217958
dgv2752n100 CNV gain+loss 25217958
dgv2753n100 CNV loss 25217958
dgv2755n100 CNV gain 25217958
dgv2762n100 CNV gain+loss 25217958
dgv2763n100 CNV loss 25217958
dgv2764n100 CNV gain 25217958
dgv2765n100 CNV gain 25217958
dgv2767n100 CNV gain 25217958
dgv2997n100 CNV loss 25217958
dgv2998n100 CNV gain 25217958
dgv2999n100 CNV loss 25217958
dgv3000n100 CNV gain+loss 25217958
dgv3001n100 CNV gain+loss 25217958
dgv3002n100 CNV loss 25217958
dgv3003n100 CNV gain 25217958
dgv3004n100 CNV gain 25217958
dgv3005n100 CNV gain+loss 25217958
dgv3006n100 CNV loss 25217958
dgv3007n100 CNV loss 25217958
dgv3008n100 CNV gain 25217958
dgv462n67 CNV gain 20364138
dgv481e214 CNV gain 21293372
dgv482e214 CNV gain 21293372
dgv485n67 CNV loss 20364138
dgv4919n54 CNV loss 21841781
dgv793e212 CNV loss 25503493
dgv848e212 CNV loss 25503493
dgv849e212 CNV gain 25503493
esv1004883 CNV gain 20482838
esv23670 CNV loss 19812545
esv25951 CNV loss 19812545
esv2631582 CNV gain 19546169
esv2657437 CNV deletion 23128226
esv2714669 CNV deletion 23290073
esv2758632 CNV gain+loss 17122850
esv2758652 CNV gain+loss 17122850
esv2760412 CNV gain 21179565
esv2760416 CNV gain+loss 21179565
esv2762188 CNV gain+loss 21179565
esv2762254 CNV gain+loss 21179565
esv2914901 CNV duplication 24192839
esv32598 CNV gain 17666407
esv3360897 CNV duplication 20981092
esv3378041 CNV duplication 20981092
esv3430066 CNV duplication 20981092
esv3571454 CNV gain 25503493
esv3584701 CNV loss 24956385
esv3584925 CNV gain 24956385
esv3638939 CNV loss 21293372
esv3638940 CNV gain 21293372
esv3638941 CNV loss 21293372
esv3638942 CNV gain 21293372
esv3892796 CNV loss 25118596
esv3892879 CNV gain 25118596
esv987821 CNV gain 20482838
nsv1038955 CNV loss 25217958
nsv1042130 CNV gain 25217958
nsv1050325 CNV loss 25217958
nsv1056602 CNV gain 25217958
nsv1056863 CNV loss 25217958
nsv1076419 CNV duplication 25765185
nsv1132417 CNV duplication 24896259
nsv1141278 CNV duplication 24896259
nsv1146292 CNV duplication 26484159
nsv1160357 CNV duplication 26073780
nsv1853 CNV deletion 18451855
nsv428328 CNV gain+loss 18775914
nsv436059 CNV insertion 17901297
nsv442710 CNV gain 18776908
nsv482191 CNV gain 20164927
nsv499138 OTHER inversion 21111241
nsv511045 OTHER complex 20534489
nsv517743 CNV loss 19592680
nsv572911 CNV gain 21841781
nsv572912 CNV gain 21841781
nsv7277 OTHER inversion 18451855
nsv819280 CNV loss 19587683
nsv820087 CNV loss 19587683
nsv821043 CNV duplication 20802225
nsv827719 CNV gain 20364138
nsv827721 CNV loss 20364138
nsv827722 CNV loss 20364138
nsv827723 CNV loss 20364138
nsv833269 CNV loss 17160897
nsv9357 CNV loss 18304495
nsv9453 CNV loss 18304495
nsv952933 CNV duplication 24416366
nsv974829 CNV duplication 23825009
nsv977115 CNV duplication 23825009

Additional Variant Information for MIR1972-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1972-2 Gene

Disorders for MIR1972-2 Gene

Additional Disease Information for MIR1972-2

No disorders were found for MIR1972-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1972-2 Gene

Publications for MIR1972-2 Gene

  1. Large-scale genotyping identifies 41 new loci associated with breast cancer risk. (PMID: 23535729) Michailidou K … Easton DF (Nature genetics 2013) 3 58
  2. Genome-wide association studies identify four ER negative-specific breast cancer risk loci. (PMID: 23535733) Garcia-Closas M … Kraft P (Nature genetics 2013) 3 58
  3. Identification of new microRNA genes and aberrant microRNA profiles in childhood acute lymphoblastic leukemia. (PMID: 18923441) Schotte D … den Boer ML (Leukemia 2009) 3 58
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR1972-2 Gene

Sources for MIR1972-2 Gene

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