Aliases for MIR194-2HG Gene

Data sources for MIR194-2HG Gene:

Subcategory (RNA class) for MIR194-2HG Gene

lncRNA

Aliases for MIR194-2HG Gene

External Ids for MIR194-2HG Gene

Previous GeneCards Identifiers for MIR194-2HG Gene

  • GC11M064890

Summaries for MIR194-2HG Gene

GeneCards Summary for MIR194-2HG Gene

MIR194-2HG (MIR194-2 Host Gene) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for MIR194-2HG Gene

  • mir-194 microRNA precursor family
  • mir-192/215 microRNA precursor

Additional gene information for MIR194-2HG Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR194-2HG Gene

Genomics for MIR194-2HG Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR194-2HG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J064884 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +3.4 3412 10.2 TBP ZBTB10 MXD4 CEBPA NR2C1 MNT DEK IKZF1 SMAD5 IRF2 EHD1 HSALNG0084832 MIR192 MIR194-2 MIR194-2HG SF1 SYVN1 NEAT1 PLCB3 POLA2
GH11J064885 Promoter/Enhancer 0.5 Ensembl dbSUPER 0.4 +9.7 9748 0.2 EHD1 RPS16P6 MIR194-2HG CDC42BPG
GH11J064881 Enhancer 0.3 dbSUPER 0.4 +10.8 10799 0.6 KDM1A RPS16P6 lnc-PPP2R5B-3 EHD1 MIR194-2HG CDC42BPG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR194-2HG on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR194-2HG Gene

Latest Assembly
chr11:64,882,820-64,893,449
(GRCh38/hg38)
Size:
10,630 bases
Orientation:
Minus strand

Previous Assembly
chr11:64,655,930-64,660,921
(GRCh37/hg19 by Entrez Gene)
Size:
4,992 bases
Orientation:
Minus strand

chr11:64,658,827-64,660,921
(GRCh37/hg19 by Ensembl)
Size:
2,095 bases
Orientation:
Minus strand

Genomic View for MIR194-2HG Gene

Genes around MIR194-2HG on UCSC Golden Path with GeneCards custom track
MIR194-2HG in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIR194-2HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR194-2HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR194-2HG Gene

Proteins for MIR194-2HG Gene

Post-translational modifications for MIR194-2HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR194-2HG Gene

Domains & Families for MIR194-2HG Gene

Gene Families for MIR194-2HG Gene

genes like me logo Genes that share domains with MIR194-2HG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR194-2HG Gene

Function for MIR194-2HG Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR194-2HG Gene

Localization for MIR194-2HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR194-2HG Gene

Pathways & Interactions for MIR194-2HG Gene

PathCards logo

SuperPathways for MIR194-2HG Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR194-2HG Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035195 gene silencing by miRNA IEA --
genes like me logo Genes that share ontologies with MIR194-2HG: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR194-2HG Gene

Drugs & Compounds for MIR194-2HG Gene

No Compound Related Data Available

Transcripts for MIR194-2HG Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR194-2HG Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007697E8_9606 lncRNA 3647 2

Ensembl: ENST00000413053 (view in UCSC) ,

LNCipedia: MIR194-2HG:2,

URS00008E3A09_9606 lncRNA 2521 2

RefSeq: NR_133638,

LNCipedia: MIR194-2HG:10,

URS00008E3A59_9606 lncRNA 1320 2

RefSeq: NR_133639,

LNCipedia: MIR194-2HG:12,

URS00008E3A49_9606 lncRNA 1159 2

RefSeq: NR_133640,

LNCipedia: MIR194-2HG:11,

URS00004434C2_9606 lncRNA 1783 3

LncBook: HSALNT0176672,

LNCipedia: MIR194-2HG:1,

NONCODE: NONHSAT022040.2,

MIR194-2HG in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR194-2HG Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR194-2HG Gene

No ASD Table

Relevant External Links for MIR194-2HG Gene

GeneLoc Exon Structure for
MIR194-2HG

Expression for MIR194-2HG Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR194-2HG Gene

Orthologs for MIR194-2HG Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR194-2HG Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 99 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia -- 31
  • 90 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia bta-mir-194-2 31
  • 86 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Mir194-2 31
  • 86 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia oan-mir-194-2 31
  • 73 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia aca-mir-194-2 31
  • 75 (a)
OneToOne
Zebrafish
(Danio rerio)
Actinopterygii dre-mir-194a 31
  • 65 (a)
OneToMany
CU138503.6 31
  • 60 (a)
OneToMany
dre-mir-194b 31
  • 60 (a)
OneToMany
Species where no ortholog for MIR194-2HG was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for MIR194-2HG Gene

ENSEMBL:
Gene Tree for MIR194-2HG (if available)
TreeFam:
Gene Tree for MIR194-2HG (if available)

Paralogs for MIR194-2HG Gene

No data available for Paralogs for MIR194-2HG Gene

Variants for MIR194-2HG Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIR194-2HG Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for MIR194-2HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR194-2HG

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR194-2HG Gene

Disorders for MIR194-2HG Gene

Additional Disease Information for MIR194-2HG

No disorders were found for MIR194-2HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR194-2HG Gene

Publications for MIR194-2HG Gene

  1. miR-194 as predictive biomarker of responsiveness to neoadjuvant chemoradiotherapy in patients with locally advanced rectal adenocarcinoma. (PMID: 28870889) D'Angelo E … Agostini M (Journal of clinical pathology 2018) 3
  2. miR-194 inhibits the proliferation, invasion, migration, and enhances the chemosensitivity of non-small cell lung cancer cells by targeting forkhead box A1 protein. (PMID: 26909612) Zhu X … Fan L (Oncotarget 2016) 3
  3. MicroRNA-194 acts as a prognostic marker and inhibits proliferation in hepatocellular carcinoma by targeting MAP4K4. (PMID: 26722431) Zhao Y … Zhao P (International journal of clinical and experimental pathology 2015) 3
  4. Inducible expression of microRNA-194 is regulated by HNF-1alpha during intestinal epithelial cell differentiation. (PMID: 18492795) Hino K … Watanabe M (RNA (New York, N.Y.) 2008) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for MIR194-2HG Gene

Sources for MIR194-2HG Gene