Aliases for MIR193BHG Gene

Subcategory (RNA class) for MIR193BHG Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for MIR193BHG Gene

  • MIR193B Host Gene 2 3 5
  • MIR193BHG 2 5 165
  • NONHSAG018669.2 91
  • NONHSAG018670.2 91
  • NONHSAG018672.2 91
  • HSALNG0109730 164

External Ids for MIR193BHG Gene

Summaries for MIR193BHG Gene

GeneCards Summary for MIR193BHG Gene

MIR193BHG (MIR193B Host Gene) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for MIR193BHG Gene

Additional gene information for MIR193BHG Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR193BHG Gene

Genomics for MIR193BHG Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR193BHG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J014300 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 631.9 +4.8 4834 10.9 SP1 HNRNPL CREB1 GATAD2A CTCF ZBTB33 PRDM10 TFE3 IKZF1 NFKBIZ MIR193BHG PARN BFAR PDXDC1 NPIPP1 MRTFB AF480506-001 MIR193B MIR365A lnc-PARN-10
GH16J014299 Enhancer 0.9 Ensembl ENCODE 600.7 -1.7 -1664 0.6 GATAD2A CTCF ZBTB33 RCOR2 SCRT2 HDAC2 FOXA2 KAT7 SCRT1 SAP130 MIR193BHG TRT-CGT2-1 MRTFB PARN
GH16J014325 Enhancer 1.2 Ensembl ENCODE dbSUPER 22.8 +24.2 24237 2.4 PRDM10 ZNF629 ZNF692 ZIC2 PATZ1 ZNF600 ZNF561 SCRT2 ZBTB44 ZBTB20 MIR193BHG PKD1P3 piR-44085-008 AF480506-001 lnc-PARN-10 MRTFB PARN
GH16J014317 Enhancer 1.2 Ensembl ENCODE dbSUPER 18.6 +16.9 16862 1.6 GATAD2A TFE3 RCOR2 ZSCAN4 RXRB IRF2 SP1 PBX2 CEBPA FOXK2 MIR193BHG PKD1P6 AF480506-001 piR-44085-008 lnc-PARN-10 MRTFB PARN
GH16J014435 Enhancer 0.8 FANTOM5 Ensembl ENCODE 10.8 +135.3 135257 3.2 TEAD4 ZNF316 MAFF MAFK EMSY piR-57879 MIR193B MIR193BHG LOC100505915 LOC105371094 PARN MRTFB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR193BHG on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR193BHG Gene

Genomic Locations for MIR193BHG Gene
chr16:14,301,364-14,336,038
(GRCh38/hg38)
Size:
34,675 bases
Orientation:
Plus strand
chr16:14,396,145-14,420,374
(GRCh37/hg19)
Size:
24,230 bases
Orientation:
Plus strand

Genomic View for MIR193BHG Gene

Genes around MIR193BHG on UCSC Golden Path with GeneCards custom track
MIR193BHG in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR193BHG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR193BHG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR193BHG Gene

Proteins for MIR193BHG Gene

Post-translational modifications for MIR193BHG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR193BHG Gene

Domains & Families for MIR193BHG Gene

Gene Families for MIR193BHG Gene

genes like me logo Genes that share domains with MIR193BHG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR193BHG Gene

Function for MIR193BHG Gene

Phenotypes From GWAS Catalog for MIR193BHG Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR193BHG Gene

Localization for MIR193BHG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR193BHG Gene

Pathways & Interactions for MIR193BHG Gene

PathCards logo

SuperPathways for MIR193BHG Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR193BHG Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR193BHG Gene

Drugs & Compounds for MIR193BHG Gene

No Compound Related Data Available

Transcripts for MIR193BHG Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR193BHG Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008E3A4D_9606 lncRNA 815 3

HGNC: 51945,

RefSeq: NR_132983,

LNCipedia: MIR193BHG:35,

URS0000BD2794_9606 lncRNA 668 3

Ensembl: ENST00000641728 (view in UCSC) ,

LncBook: HSALNT0227986,

LNCipedia: MIR193BHG:40,

URS0000BD1CCE_9606 lncRNA 660 3

Ensembl: ENST00000641033 (view in UCSC) ,

LncBook: HSALNT0227984,

LNCipedia: MIR193BHG:41,

URS0000BDB7EF_9606 lncRNA 641 3

Ensembl: ENST00000641906 (view in UCSC) ,

LncBook: HSALNT0227991,

LNCipedia: MIR193BHG:47,

URS0000BD049D_9606 lncRNA 619 3

Ensembl: ENST00000641175 (view in UCSC) ,

LncBook: HSALNT0227970,

LNCipedia: MIR193BHG:37,

MIR193BHG in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR193BHG Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR193BHG Gene

No ASD Table

Relevant External Links for MIR193BHG Gene

GeneLoc Exon Structure for
MIR193BHG

Expression for MIR193BHG Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR193BHG

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR193BHG Gene

Orthologs for MIR193BHG Gene

Evolution for MIR193BHG Gene

ENSEMBL:
Gene Tree for MIR193BHG (if available)
TreeFam:
Gene Tree for MIR193BHG (if available)

No data available for Orthologs for MIR193BHG Gene

Paralogs for MIR193BHG Gene

No data available for Paralogs for MIR193BHG Gene

Variants for MIR193BHG Gene

Additional dbSNP identifiers (rs#s) for MIR193BHG Gene

Additional Variant Information for MIR193BHG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR193BHG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR193BHG Gene

Disorders for MIR193BHG Gene

No disorders were found for MIR193BHG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR193BHG Gene

Publications for MIR193BHG Gene

  1. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry JR … Ong KK (Nature 2014) 3
  2. Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. (PMID: 24952745) Arking DE … Newton-Cheh C (Nature genetics 2014) 3
  3. Genome-wide association study of sexual maturation in males and females highlights a role for body mass and menarche loci in male puberty. (PMID: 24770850) Cousminer DL … Early Growth Genetics Consortium (Human molecular genetics 2014) 3
  4. Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G … Peterson K (Molecular vision 2002) 3
  5. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for MIR193BHG Gene

Sources for MIR193BHG Gene