MIR18A Gene (RNA Gene)

MicroRNA 18a

GC13P091432
GIFtS:
18
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR18A Gene

Subcategory (RNA class) for MIR18A Gene

miRNA

Number of RNA Genes sources:

5 / 17

Aliases for MIR18A Gene

  • MicroRNA 18a 2 3 5
  • Hsa-MiR-18a-3p 163 173
  • Hsa-MiR-18a-5p 163 173
  • Hsa-Mir-18a 2 3
  • Hsa-Mir-18 2 3
  • MIR18A 2 5
  • Putative MicroRNA 17 Host Gene Protein 3
  • Putative MicroRNA Host Gene 1 Protein 3
  • Hsa-Mir-17-P2a 178
  • MIMAT0002891 50
  • MIMAT0000072 50
  • MicroRNA 18 2
  • MI0000072 50
  • C13orf25 3
  • MiRNA18A 3
  • MIR17HG 3
  • MIRN18A 3
  • Mir-18a 3
  • MIRHG1 3
  • MIRN18 3
  • MiR-18 3
  • MIR18 3
  • MIRH1 3

External Ids for MIR18A Gene

Previous HGNC Symbols for MIR18A Gene

  • MIRN18
  • MIRN18A

Previous GeneCards Identifiers for MIR18A Gene

  • GC13P090866
  • GC13P090876
  • GC13P092015
  • GC13P092023
  • GC13P092030
  • GC13P092038
  • GC13P092047
  • GC13P092057
  • GC13P092066
  • GC13P092076
  • GC13P092084
  • GC13P092098
  • GC13P092112
  • GC13P091351
  • GC13P091356
  • GC13P091402
  • GC13P091405
  • GC13P091408
  • GC13P091422
  • GC13P091360
  • GC13P091371
  • GC13P091379
  • GC13P091387
  • GC13P091391
  • GC13P091397

Summaries for MIR18A Gene

Entrez Gene Summary for MIR18A Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR18A Gene

MIR18A (MicroRNA 18a) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR18A include Thyroid Gland Anaplastic Carcinoma and Medulloblastoma. Among its related pathways are Parkinsons Disease Pathway and DNA Damage Response.

Additional gene information for MIR18A Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR18A Gene

Genomics for MIR18A Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MIR18A Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH13J091346 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -1.7 -1746 5.2 GATAD2A CTCF TFE3 POLR2A BACH1 TARDBP FOXA1 LARP7 PRDM1 ZNF143 MIR17 MIR17HG MIR18A MIR19A piR-37523 GPC5 AB372624 MIR19B1 MIR20A MIR92A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR18A on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR18A Gene

Genomic Locations for MIR18A Gene
chr13:91,350,747-91,350,827
(GRCh38/hg38)
Size:
81 bases
Orientation:
Plus strand
chr13:92,003,005-92,003,075
(GRCh37/hg19)
Size:
71 bases
Orientation:
Plus strand

Genomic View for MIR18A Gene

Genes around MIR18A on UCSC Golden Path with GeneCards custom track
MIR18A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR18A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR18A Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR18A Gene

Proteins for MIR18A Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR18A Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR18A Gene

Domains & Families for MIR18A Gene

Gene Families for MIR18A Gene

HGNC:
genes like me logo Genes that share domains with MIR18A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR18A Gene

Function for MIR18A Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Gene Ontology (GO) - Molecular Function for MIR18A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA 20940405
genes like me logo Genes that share ontologies with MIR18A: view

Animal Model Products

CRISPR Products

miRNA for MIR18A Gene

miRTarBase miRNAs that target MIR18A

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MIR18A Gene

Localization for MIR18A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIR18A gene
Compartment Confidence
plasma membrane 1
extracellular 1
nucleus 1
cytosol 1

Gene Ontology (GO) - Cellular Components for MIR18A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space HDA 18766170
GO:0048471 perinuclear region of cytoplasm ISS --
genes like me logo Genes that share ontologies with MIR18A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for MIR18A Gene

Pathways & Interactions for MIR18A Gene

genes like me logo Genes that share pathways with MIR18A: view

Pathways by source for MIR18A Gene

1 KEGG pathway for MIR18A Gene

Gene Ontology (GO) - Biological Process for MIR18A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035195 gene silencing by miRNA IDA 20940405
GO:0050861 positive regulation of B cell receptor signaling pathway IDA 24169826
GO:1903671 negative regulation of sprouting angiogenesis IDA 20299512
GO:1905932 positive regulation of vascular smooth muscle cell differentiation involved in phenotypic switching ISS --
genes like me logo Genes that share ontologies with MIR18A: view

No data available for Interacting Proteins and SIGNOR curated interactions for MIR18A Gene

Drugs & Compounds for MIR18A Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR18A Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR18A Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000035CC3E_9606 miRNA 23 6

RefSeq: NR_029488,

LncBase: hsa-miR-18a-5p,

miRBase: MIMAT0000072,

MirGeneDB: Hsa-Mir-17-P2a_5p,

TarBase: hsa-miR-18a-5p,

ENA: LM378759.1:1..23:ncRNA, LM608161.1:6..28:ncRNA,

URS00004131FE_9606 miRNA 23 6

RefSeq: NR_029488,

LncBase: hsa-miR-18a-3p,

miRBase: MIMAT0002891,

MirGeneDB: Hsa-Mir-17-P2a_3p,

TarBase: hsa-miR-18a-3p,

ENA: LM379814.1:1..23:ncRNA, LM608161.1:47..69:ncRNA,

URS00003B0CDB_9606 precursor_RNA 71 5

HGNC: 31548,

RefSeq: NR_029488,

Ensembl: ENST00000362310 (view in UCSC) ,

miRBase: MI0000072,

ENA: LM608161.1:1..71:precursor_RNA,

URS000025EAD4_9606 precursor_RNA 81 1

ENA: AB176708.1:1190..1270:ncRNA, AF480553.1:1..81:misc_RNA,

URS0000EFE5F4_9606 precursor_RNA 65 1

MirGeneDB: Hsa-Mir-17-P2a,

MIR18A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR18A Gene

5 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR18A Gene

No ASD Table

Relevant External Links for MIR18A Gene

GeneLoc Exon Structure for
MIR18A

Expression for MIR18A Gene

Products:

  1. Primer
  2. Gene Expression Assay

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR18A

Evidence on tissue expression from TISSUES for MIR18A Gene

  • Blood(2.4)
  • Liver(2.2)
  • Intestine(2.2)
  • Heart(2.1)
  • Nervous system(2.1)
  • Lymph node(2)
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR18A Gene

Orthologs for MIR18A Gene

Evolution for MIR18A Gene

ENSEMBL:
Gene Tree for MIR18A (if available)
TreeFam:
Gene Tree for MIR18A (if available)

No data available for Orthologs for MIR18A Gene

Paralogs for MIR18A Gene

No data available for Paralogs for MIR18A Gene

Variants for MIR18A Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for MIR18A Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR18A Gene

Variant ID Type Subtype PubMed ID
nsv832679 CNV gain 17160897

Additional Variant Information for MIR18A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR18A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR18A Gene

Disorders for MIR18A Gene

MalaCards: The human disease database

(57) MalaCards diseases for MIR18A Gene - From: miR2Disease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
thyroid gland anaplastic carcinoma
  • anaplastic thyroid carcinoma
medulloblastoma
  • mdb
hepatocellular carcinoma
  • hcc
lung cancer
  • adenocarcinoma of lung
lymphoma, hodgkin, classic
  • chl
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIR18A

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with MIR18A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR18A Gene

Publications for MIR18A Gene

  1. Long noncoding RNA CASC2 promotes paclitaxel resistance in breast cancer through regulation of miR-18a-5p/CDK19. (PMID: 31352515) Zheng P … Qin S (Histochemistry and cell biology 2019) 3
  2. lncRNA CASC2/miR‑18a‑5p axis regulates the malignant potential of nasopharyngeal carcinoma by targeting RBBP8. (PMID: 30569153) Miao WJ … Jin QQ (Oncology reports 2019) 3
  3. Upregulated lncRNA CASC2 May Inhibit Malignant Melanoma Development Through Regulating miR-18a-5p/RUNX1. (PMID: 29422114) Zhang Y … Fan J (Oncology research 2019) 3
  4. LncRNA FER1L4 induces apoptosis and suppresses EMT and the activation of PI3K/AKT pathway in osteosarcoma cells via inhibiting miR-18a-5p to promote SOCS5. (PMID: 31473323) Ye F … Feng D (Gene 2019) 3
  5. The role and mechanism of microRNA‑18a‑5p in oral squamous cell carcinoma. (PMID: 31257489) Huang C … Lai L (Molecular medicine reports 2019) 3

ExternalLinks

View latest publications for MIR18A gene in Mastermind

Products for MIR18A Gene

Sources for MIR18A Gene