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Aliases for MIR17 Gene

Subcategory (RNA class) for MIR17 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR17 Gene

  • MicroRNA 17 2 3 5
  • Hsa-Mir-17 3
  • MIR17-5p 3
  • MiR17-3p 3
  • MiRNA17 3
  • MiRNA91 3
  • MIRN91 3
  • MiR-17 3
  • MIRN17 3
  • MIR91 3

External Ids for MIR17 Gene

Previous HGNC Symbols for MIR17 Gene

  • MIRN17

Previous GeneCards Identifiers for MIR17 Gene

  • GC13P090870
  • GC13P090878
  • GC13P092002

Summaries for MIR17 Gene

Entrez Gene Summary for MIR17 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR17 Gene

MIR17 (MicroRNA 17) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR17 include Pediatric Systemic Lupus Erythematosus and Polycystic Kidney Disease 2. Among its related pathways are DNA Damage Response and MicroRNAs in cancer.

Additional gene information for MIR17 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR17 Gene

Genomics for MIR17 Gene

GeneHancer (GH) Regulatory Elements for MIR17 Gene

Promoters and enhancers for MIR17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I091346 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 550.8 -1.6 -1572 4.8 PKNOX1 CLOCK FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 GLIS2 GC13P091372 GC13P091377 GC13P091384 GC13P091391 GC13P091394 GC13P091397 GC13P091399 GC13P091400 GC13P091401 MIR17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR17 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR17 Gene

Genomic Locations for MIR17 Gene
chr13:91,350,605-91,350,688
(GRCh38/hg38)
Size:
84 bases
Orientation:
Plus strand
chr13:92,000,074-92,006,833
(GRCh37/hg19)

Genomic View for MIR17 Gene

Genes around MIR17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR17 Gene

Proteins for MIR17 Gene

Post-translational modifications for MIR17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR17 Gene

Domains & Families for MIR17 Gene

Gene Families for MIR17 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR17: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR17 Gene

Function for MIR17 Gene

Gene Ontology (GO) - Molecular Function for MIR17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903231 mRNA binding involved in posttranscriptional gene silencing IMP 19390056
genes like me logo Genes that share ontologies with MIR17: view

Animal Model Products

miRNA Products

Clone Products

  • Addgene plasmids for MIR17

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR17 Gene

Localization for MIR17 Gene

Gene Ontology (GO) - Cellular Components for MIR17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 26646931
GO:0005622 intracellular IEA --
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with MIR17: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MIR17 Gene

Pathways & Interactions for MIR17 Gene

genes like me logo Genes that share pathways with MIR17: view

Pathways by source for MIR17 Gene

1 KEGG pathway for MIR17 Gene

Interacting Proteins for MIR17 Gene

Gene Ontology (GO) - Biological Process for MIR17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003085 negative regulation of systemic arterial blood pressure ISS --
GO:0003151 outflow tract morphogenesis ISS --
GO:0010629 negative regulation of gene expression IDA 22161164
GO:0010666 positive regulation of cardiac muscle cell apoptotic process ISS --
GO:0035195 gene silencing by miRNA IGI 21145484
genes like me logo Genes that share ontologies with MIR17: view

No data available for SIGNOR curated interactions for MIR17 Gene

Drugs & Compounds for MIR17 Gene

No Compound Related Data Available

Transcripts for MIR17 Gene

mRNA/cDNA for MIR17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

  • Addgene plasmids for MIR17

Alternative Splicing Database (ASD) splice patterns (SP) for MIR17 Gene

No ASD Table

Relevant External Links for MIR17 Gene

GeneLoc Exon Structure for
MIR17
ECgene alternative splicing isoforms for
MIR17

Expression for MIR17 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR17 Gene:

MIR17
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR17 Gene

Orthologs for MIR17 Gene

Evolution for MIR17 Gene

ENSEMBL:
Gene Tree for MIR17 (if available)
TreeFam:
Gene Tree for MIR17 (if available)

No data available for Orthologs for MIR17 Gene

Paralogs for MIR17 Gene

No data available for Paralogs for MIR17 Gene

Variants for MIR17 Gene

Sequence variations from dbSNP and Humsavar for MIR17 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1002349918 -- 91,351,188(+) T/C/G downstream_transcript_variant
rs1002944928 -- 91,349,535(+) G/A upstream_transcript_variant
rs1003385207 -- 91,349,835(+) A/G upstream_transcript_variant
rs1004372915 -- 91,349,113(+) C/G/T upstream_transcript_variant
rs1004434983 -- 91,349,440(+) A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR17 Gene

Variant ID Type Subtype PubMed ID
nsv832679 CNV gain 17160897

Additional Variant Information for MIR17 Gene

Human Gene Mutation Database (HGMD)
MIR17
SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR17

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR17 Gene

Disorders for MIR17 Gene

MalaCards: The human disease database

(2) MalaCards diseases for MIR17 Gene - From: HGMD and GeneCards

Disorder Aliases PubMed IDs
pediatric systemic lupus erythematosus
  • sle, pediatric onset
polycystic kidney disease 2
  • pkd2
- elite association - COSMIC cancer census association via MalaCards
Search MIR17 in MalaCards View complete list of genes associated with diseases

Additional Disease Information for MIR17

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with MIR17: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR17 Gene

Publications for MIR17 Gene

  1. Association between hsa-mir-146a genotype and tumor age-of-onset in BRCA1/BRCA2-negative familial breast and ovarian cancer patients. (PMID: 20810544) Pastrello C … Maestro R (Carcinogenesis 2010) 3 44 58
  2. Novel genetic variants in microRNA genes and familial breast cancer. (PMID: 19048628) Shen J … Zhao H (International journal of cancer 2009) 3 44 58
  3. MicroRNAs in the miR-17 and miR-15 families are downregulated in chronic kidney disease with hypertension. (PMID: 28771472) Nandakumar P … Chakravarti A (PloS one 2017) 3 58
  4. ADAR1 and MicroRNA; A Hidden Crosstalk in Cancer. (PMID: 28398248) Cho CJ … Chang S (International journal of molecular sciences 2017) 3 58
  5. Enantioselective Modulatory Effects of Naringenin  Enantiomers on the Expression Levels of miR-17-3p  Involved in Endogenous Antioxidant Defenses. (PMID: 28264488) Curti V … Daglia M (Nutrients 2017) 3 58

Products for MIR17 Gene

  • Addgene plasmids for MIR17

Sources for MIR17 Gene

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