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Aliases for MIR1471 Gene

Subcategory (RNA class) for MIR1471 Gene

miRNA

Quality Score for this RNA gene is

18

Aliases for MIR1471 Gene

  • MicroRNA 1471 2 3 5
  • Hsa-Mir-1471 3
  • MIRN1471 3

External Ids for MIR1471 Gene

Previous HGNC Symbols for MIR1471 Gene

  • MIRN1471

Previous GeneCards Identifiers for MIR1471 Gene

  • GC00U922856
  • GC02M232466
  • GC02M232756

Summaries for MIR1471 Gene

Entrez Gene Summary for MIR1471 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1471 Gene

MIR1471 (MicroRNA 1471) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR1471 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1471 Gene

Genomics for MIR1471 Gene

GeneHancer (GH) Regulatory Elements for MIR1471 Gene

Promoters and enhancers for MIR1471 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J232300 Enhancer 1.1 ENCODE dbSUPER 10.9 -409.1 -409052 1.2 FOXA2 NEUROD1 FOS REST PPARG KAT8 NFIL3 MIER3 RCOR2 KDM1A MIR1471 LOC730069 GC02P232173 DIS3L2
GH02J232235 Enhancer 0.9 ENCODE dbSUPER 9.9 -344.1 -344112 1.1 BMI1 BATF ZIC2 IRF4 POLR2A EED ATF7 FOS IKZF2 RUNX3 NPPC MIR1471 GC02P232173 LOC730069 DIS3L2
GH02J231985 Enhancer 0.9 Ensembl ENCODE 9.2 -93.7 -93728 0.4 HDAC1 MEIS2 GTF2F1 PKNOX1 ATF1 TAF9B NFRKB SIN3A RFX5 ZFHX2 DIS3L2 ENSG00000227033 NPPC MIR1471
GH02J232204 Enhancer 0.8 Ensembl ENCODE 10.1 -312.3 -312261 1 SOX5 SOX13 RXRA TEAD1 HLF DMAP1 ZNF7 NFIL3 HNF4A BCL6 MIR562 DIS3L2 ENSG00000227033 MIR1471 GC02P232173 LOC730069
GH02J232237 Enhancer 0.8 ENCODE dbSUPER 9.6 -346.0 -345991 2.4 SRF USF1 SOX6 TAL1 CEBPG CTBP1 GATA3 ATF4 IKZF1 NPPC MIR1471 GC02P232173 LOC730069 DIS3L2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR1471 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR1471 Gene

Genomic Locations for MIR1471 Gene
chr2:231,892,242-231,892,298
(GRCh38/hg38)
Size:
57 bases
Orientation:
Minus strand
chr2:232,756,952-232,757,008
(GRCh37/hg19)
Size:
57 bases
Orientation:
Minus strand

Genomic View for MIR1471 Gene

Genes around MIR1471 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1471 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1471 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1471 Gene

ORGUL Member Location for MIR1471 Gene

ORGUL Member Location for MIR1471 gene

Proteins for MIR1471 Gene

Post-translational modifications for MIR1471 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1471 Gene

Domains & Families for MIR1471 Gene

Gene Families for MIR1471 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1471: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1471 Gene

Function for MIR1471 Gene

Phenotypes From GWAS Catalog for MIR1471 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1471 Gene

Localization for MIR1471 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR1471 Gene

Pathways & Interactions for MIR1471 Gene

SuperPathways for MIR1471 Gene

No Data Available

Interacting Proteins for MIR1471 Gene

Gene Ontology (GO) - Biological Process for MIR1471 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1471 Gene

Drugs & Compounds for MIR1471 Gene

No Compound Related Data Available

Transcripts for MIR1471 Gene

mRNA/cDNA for MIR1471 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1471 Gene

No ASD Table

Relevant External Links for MIR1471 Gene

GeneLoc Exon Structure for
MIR1471
ECgene alternative splicing isoforms for
MIR1471

Expression for MIR1471 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR1471 Gene:

MIR1471
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1471 Gene

Orthologs for MIR1471 Gene

Evolution for MIR1471 Gene

ENSEMBL:
Gene Tree for MIR1471 (if available)
TreeFam:
Gene Tree for MIR1471 (if available)

No data available for Orthologs for MIR1471 Gene

Paralogs for MIR1471 Gene

No data available for Paralogs for MIR1471 Gene

Variants for MIR1471 Gene

Sequence variations from dbSNP and Humsavar for MIR1471 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1002076078 -- 231,893,675(-) C/T upstream_transcript_variant
rs1003235589 -- 231,894,077(-) T/C upstream_transcript_variant
rs1006152230 -- 231,892,779(-) T/C upstream_transcript_variant
rs1006936689 -- 231,891,824(-) G/A downstream_transcript_variant
rs1006990569 -- 231,892,105(-) C/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR1471 Gene

Variant ID Type Subtype PubMed ID
nsv508892 CNV insertion 20534489
nsv428408 CNV gain+loss 18775914
esv2759117 CNV gain+loss 17122850

Additional Variant Information for MIR1471 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1471

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1471 Gene

Disorders for MIR1471 Gene

Additional Disease Information for MIR1471

No disorders were found for MIR1471 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1471 Gene

Publications for MIR1471 Gene

  1. Hidden layers of human small RNAs. (PMID: 18402656) Kawaji H … Hayashizaki Y (BMC genomics 2008) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR1471 Gene

Sources for MIR1471 Gene

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