microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR1471 Gene

Subcategory (RNA class) for MIR1471 Gene

miRNA

Number of RNA Genes sources:

1 / 17

Aliases for MIR1471 Gene

  • MicroRNA 1471 2 3 5
  • Hsa-Mir-1471 2 3
  • MIR1471 2 5
  • MIMAT0007349 50
  • MI0007076 50
  • MIRN1471 3

External Ids for MIR1471 Gene

Previous HGNC Symbols for MIR1471 Gene

  • MIRN1471

Previous GeneCards Identifiers for MIR1471 Gene

  • GC00U922856
  • GC02M232466
  • GC02M232756

Summaries for MIR1471 Gene

Entrez Gene Summary for MIR1471 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1471 Gene

MIR1471 (MicroRNA 1471) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR1471 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIR1471 Gene

Genomics for MIR1471 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR1471 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J231890 Enhancer 0.5 Ensembl 600.7 +1.1 1097 0.4 CEBPA SCRT2 SOX13 FOXA2 NFIB NFIL3 NFIA SOX5 HLF HSALNG0023006 MIR1471 NPPC RF00017-3459 PDE6D
GH02J232300 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.9 -409.0 -409003 1.4 CREB1 GATAD2A TFE3 SOX13 CTCF RCOR2 TARDBP FOXA1 RFX1 RXRB MIR1471 HSALNG0023022 HSALNG0023023 ALPP DIS3L2
GH02J232230 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 10.2 -339.1 -339103 2.4 CTCF USF1 RAD21 ATF7 SMARCA4 HLF ZNF24 SMC3 MIR1471 lnc-ALPP-3 MIR562 ALPP DIS3L2
GH02J232235 Enhancer 1.1 Ensembl ENCODE dbSUPER 9.9 -345.1 -345137 4.1 ZIC2 POLR2A TCF12 IKZF2 SOX6 ATF7 EED DPF2 JUND CEBPB NPPC MIR1471 lnc-ALPP-3 MIR562 ALPP DIS3L2
GH02J231929 Enhancer 0.8 Ensembl ENCODE 11 -38.3 -38283 2.1 CTCF ATF7 REST ZBTB20 CREB1 ZBTB17 POLR2A ZNF398 ZNF143 SMARCA4 DIS3L2 MIR1471 ENSG00000251485 NPPC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR1471 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR1471 Gene

Genomic Locations for MIR1471 Gene
chr2:231,892,242-231,892,298
(GRCh38/hg38)
Size:
57 bases
Orientation:
Minus strand
chr2:232,756,952-232,757,008
(GRCh37/hg19)
Size:
57 bases
Orientation:
Minus strand

Genomic View for MIR1471 Gene

Genes around MIR1471 on UCSC Golden Path with GeneCards custom track
MIR1471 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR1471 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1471 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1471 Gene

Proteins for MIR1471 Gene

Post-translational modifications for MIR1471 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1471 Gene

Domains & Families for MIR1471 Gene

Gene Families for MIR1471 Gene

HGNC:
genes like me logo Genes that share domains with MIR1471: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR1471 Gene

Function for MIR1471 Gene

Phenotypes From GWAS Catalog for MIR1471 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1471 Gene

Localization for MIR1471 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR1471 Gene

Pathways & Interactions for MIR1471 Gene

PathCards logo

SuperPathways for MIR1471 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR1471 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR1471 Gene

Drugs & Compounds for MIR1471 Gene

No Compound Related Data Available

Transcripts for MIR1471 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR1471 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E3E3_9606 precursor_RNA 57 4

HGNC: 35380,

RefSeq: NR_031717,

Ensembl: ENST00000410314 (view in UCSC) ,

miRBase: MI0007076,

URS000075B0BA_9606 miRNA 22 2

RefSeq: NR_031717,

miRBase: MIMAT0007349,

MIR1471 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1471 Gene

No ASD Table

Relevant External Links for MIR1471 Gene

GeneLoc Exon Structure for
MIR1471

No data available for mRNA/cDNA for MIR1471 Gene

Expression for MIR1471 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR1471

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1471 Gene

Orthologs for MIR1471 Gene

Evolution for MIR1471 Gene

ENSEMBL:
Gene Tree for MIR1471 (if available)
TreeFam:
Gene Tree for MIR1471 (if available)

No data available for Orthologs for MIR1471 Gene

Paralogs for MIR1471 Gene

No data available for Paralogs for MIR1471 Gene

Variants for MIR1471 Gene

Additional dbSNP identifiers (rs#s) for MIR1471 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR1471 Gene

Variant ID Type Subtype PubMed ID
esv2759117 CNV gain+loss 17122850
nsv428408 CNV gain+loss 18775914
nsv508892 CNV insertion 20534489

Additional Variant Information for MIR1471 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1471

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR1471 Gene

Disorders for MIR1471 Gene

Additional Disease Information for MIR1471

No disorders were found for MIR1471 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1471 Gene

Publications for MIR1471 Gene

  1. LOC101930370/MiR-1471 Axis Modulates the Hedgehog Signaling Pathway in Breast Cancer. (PMID: 30041193) Liu X … Zhang Y (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2018) 3
  2. Hidden layers of human small RNAs. (PMID: 18402656) Kawaji H … Hayashizaki Y (BMC genomics 2008) 3
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3

Products for MIR1471 Gene

Sources for MIR1471 Gene