microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR146A Gene

Subcategory (RNA class) for MIR146A Gene

miRNA

Number of RNA Genes sources:

6 / 17

Aliases for MIR146A Gene

  • MicroRNA 146a 2 3 5
  • Hsa-MiR-146a-3p 163 173
  • Hsa-MiR-146a-5p 163 173
  • Hsa-Mir-146a 2 3
  • Hsa-Mir-146 2 3
  • MIR146A 2 5
  • Hsa-Mir-146-P1 178
  • MicroRNA 146 2
  • MIMAT0000449 50
  • MIMAT0004608 50
  • MiRNA146A 3
  • MI0000477 50
  • MIRN146A 3
  • MiR-146a 3
  • MIRN146 3
  • RF00691 168

External Ids for MIR146A Gene

Previous HGNC Symbols for MIR146A Gene

  • MIRN146
  • MIRN146A

Previous GeneCards Identifiers for MIR146A Gene

  • GC05P159848
  • GC05P159912
  • GC05P159896
  • GC05P160470

Summaries for MIR146A Gene

Entrez Gene Summary for MIR146A Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. Some of the targets of the encoded miRNA are the transcripts for tumor necrosis factor, interleukin 1 receptor-associated kinase 1, interleukin 1-beta, TNF receptor-associated factor 6, and complement factor H. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2015]

GeneCards Summary for MIR146A Gene

MIR146A (MicroRNA 146a) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR146A include Psoriatic Arthritis and Rheumatoid Arthritis. Among its related pathways are Melatonin metabolism and effects and MicroRNAs in cancer.

Gene Wiki entry for MIR146A Gene

Rfam classification for MIR146A Gene

Additional gene information for MIR146A Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , PharmGKB "VIP" Summary and piRNA Summary for MIR146A Gene

Genomics for MIR146A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIR146A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J160486 Enhancer 0.8 Ensembl ENCODE 600.7 +0.0 30 3.8 SMAD5 IKZF2 POLR2A RCOR1 DPF2 RUNX3 BCL11A ELF1 BMI1 NR2F1 MIR146A lnc-ATP10B-2 MIR3142HG PTTG1 ATP10B
GH05J160417 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.2 -64.2 -64163 7.4 BRCA1 SP1 CREB1 PRDM10 ZNF629 IKZF1 NFKBIZ ZNF692 POLR2A BACH1 PTTG1 SLU7 HSALNG0046247 MIR146A ZBED8 lnc-PTTG1-6
GH05J160451 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 13.3 -29.8 -29763 11.4 CTCF POLR2A BACH1 STAT3 RELA SMAD5 RAD21 IKZF2 RCOR1 TRIM22 MIR146A SLU7 MN298231 lnc-PTTG1-5 MIR3142HG PTTG1 ATP10B
GH05J160433 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas 11.3 -51.3 -51263 2 SP1 PRDM10 RFX1 ZNF692 LARP7 ZNF143 PATZ1 IKZF2 POLR2A ZNF600 PTTG1 MIR146A SLU7 FABP6 PWWP2A lnc-PTTG1-4 HSALNG0046247 ATP10B
GH05J160505 Enhancer 0.8 FANTOM5 ENCODE 13.5 +21.5 21534 2.3 RFX1 PRDM1 POLR2A YY1 RAD21 RELB RUNX3 BMI1 EBF1 ATF2 MIR146A SLU7 PWWP2A lnc-ATP10B-2 lnc-PTTG1-9 PTTG1 ATP10B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR146A on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR146A Gene

Genomic Locations for MIR146A Gene
chr5:160,485,264-160,485,646
(GRCh38/hg38)
Size:
383 bases
Orientation:
Plus strand
chr5:159,895,275-159,914,433
(GRCh37/hg19)
Size:
19,159 bases
Orientation:
Plus strand

Genomic View for MIR146A Gene

Genes around MIR146A on UCSC Golden Path with GeneCards custom track
MIR146A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR146A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR146A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR146A Gene

Proteins for MIR146A Gene

Post-translational modifications for MIR146A Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR146A Gene

Domains & Families for MIR146A Gene

Gene Families for MIR146A Gene

genes like me logo Genes that share domains with MIR146A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR146A Gene

Function for MIR146A Gene

Phenotypes From GWAS Catalog for MIR146A Gene

Gene Ontology (GO) - Molecular Function for MIR146A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003730 mRNA 3'-UTR binding IDA 21329689
GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA 16885212
genes like me logo Genes that share ontologies with MIR146A: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR146A Gene

Localization for MIR146A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIR146A gene
Compartment Confidence
plasma membrane 1
extracellular 1
cytoskeleton 1
mitochondrion 1
nucleus 1
endosome 1
cytosol 1

Gene Ontology (GO) - Cellular Components for MIR146A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 26646931
GO:0005623 cell IEA --
GO:0070062 extracellular exosome ISS --
genes like me logo Genes that share ontologies with MIR146A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for MIR146A Gene

Pathways & Interactions for MIR146A Gene

PathCards logo

SuperPathways for MIR146A Gene

genes like me logo Genes that share pathways with MIR146A: view

Pathways by source for MIR146A Gene

1 BioSystems pathway for MIR146A Gene
1 KEGG pathway for MIR146A Gene

Gene Ontology (GO) - Biological Process for MIR146A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001937 negative regulation of endothelial cell proliferation IDA 23619365
GO:0010628 positive regulation of gene expression IDA 27121396
GO:0010629 negative regulation of gene expression IDA 29384235
GO:0010887 negative regulation of cholesterol storage IDA 21329689
GO:0016525 negative regulation of angiogenesis IMP 23619365
genes like me logo Genes that share ontologies with MIR146A: view

No data available for Interacting Proteins and SIGNOR curated interactions for MIR146A Gene

Drugs & Compounds for MIR146A Gene

No Compound Related Data Available

Transcripts for MIR146A Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR146A Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D8A0_9606 precursor_RNA 99 5

HGNC: 31533,

RefSeq: NR_029701,

Ensembl: ENST00000385201 (view in UCSC) ,

miRBase: MI0000477,

ENA: LM608517.1:1..99:precursor_RNA,

URS00001EFBE3_9606 miRNA 22 5

RefSeq: NR_029701,

LncBase: hsa-miR-146a-3p,

miRBase: MIMAT0004608,

TarBase: hsa-miR-146a-3p,

ENA: LM380283.1:1..22:ncRNA, LM608517.1:57..78:ncRNA,

URS000050B527_9606 miRNA 22 5

RefSeq: NR_029701,

LncBase: hsa-miR-146a-5p,

miRBase: MIMAT0000449,

TarBase: hsa-miR-146a-5p,

ENA: View 14 records in RNAcentral

URS00008516C5_9606 precursor_RNA 383 1

ENA: KR606820.1:1..383:ncRNA,

URS000085B631_9606 precursor_RNA 383 1

ENA: KR606819.1:1..383:ncRNA,

MIR146A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR146A Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR146A Gene

No ASD Table

Relevant External Links for MIR146A Gene

GeneLoc Exon Structure for
MIR146A

Expression for MIR146A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR146A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR146A

Evidence on tissue expression from TISSUES for MIR146A Gene

  • Blood(3)
  • Heart(2.6)
  • Nervous system(2.5)
  • Lymph node(2.5)
  • Muscle(2.5)
  • Liver(2.4)
  • Spleen(2.4)
  • Skin(2.4)
  • Bone marrow(2.3)
  • Kidney(2.3)
  • Intestine(2.3)
  • Lung(2.2)
  • Urine(2.2)
  • Saliva(2.2)
  • Pancreas(2.1)
genes like me logo Genes that share expression patterns with MIR146A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR146A Gene

Orthologs for MIR146A Gene

Evolution for MIR146A Gene

ENSEMBL:
Gene Tree for MIR146A (if available)
TreeFam:
Gene Tree for MIR146A (if available)

No data available for Orthologs for MIR146A Gene

Paralogs for MIR146A Gene

No data available for Paralogs for MIR146A Gene

Variants for MIR146A Gene

Additional dbSNP identifiers (rs#s) for MIR146A Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR146A Gene

Variant ID Type Subtype PubMed ID
esv3607372 CNV gain 21293372
nsv1015634 CNV gain 25217958
nsv1026980 CNV gain 25217958

Additional Variant Information for MIR146A Gene

Human Gene Mutation Database (HGMD)
MIR146A
SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR146A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR146A Gene

Disorders for MIR146A Gene

MalaCards: The human disease database

(92) MalaCards diseases for MIR146A Gene - From: miR2Disease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
psoriatic arthritis
  • psoriatic arthritis, susceptibility to
rheumatoid arthritis
  • ra
thyroid cancer, nonmedullary, 1
  • nmtc1
alzheimer disease
  • ad
prostate cancer
  • prostate cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIR146A

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with MIR146A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR146A Gene

Publications for MIR146A Gene

  1. A functional polymorphism in Pre-miR-146a gene is associated with prostate cancer risk and mature miR-146a expression in vivo. (PMID: 19902466) Xu B … Wu HF (The Prostate 2010) 3 41
  2. Common genetic variants in pre-microRNAs are associated with risk of coal workers' pneumoconiosis. (PMID: 19881472) Wang M … Ni C (Journal of human genetics 2010) 3 41
  3. Evaluation of SNPs in miR-146a, miR196a2 and miR-499 as low-penetrance alleles in German and Italian familial breast cancer cases. (PMID: 19847796) Catucci I … Peterlongo P (Human mutation 2010) 3 41
  4. Novel genetic variants in microRNA genes and familial breast cancer. (PMID: 19048628) Shen J … Zhao H (International journal of cancer 2009) 3 41
  5. Functional variant in microRNA-196a2 contributes to the susceptibility of congenital heart disease in a Chinese population. (PMID: 19514064) Xu J … Chen Y (Human mutation 2009) 3 41

Products for MIR146A Gene

Sources for MIR146A Gene