MIR142 Gene (RNA Gene)

MicroRNA 142

GC17M058331
GIFtS:
20
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The ... See more...

Aliases for MIR142 Gene

Subcategory (RNA class) for MIR142 Gene

miRNA

Number of RNA Genes sources:

6 / 17

Aliases for MIR142 Gene

  • MicroRNA 142 2 3 5
  • Hsa-MiR-142-3p 163 173
  • Hsa-MiR-142-5p 163 173
  • Hsa-Mir-142 2 3
  • MIR142 2 5
  • Hsa-Mir-142-V1 178
  • Hsa-Mir-142-V2 178
  • Hsa-Mir-142-V3 178
  • Hsa-Mir-142-V4 178
  • MIMAT0000433 50
  • MIMAT0000434 50
  • MI0000458 50
  • MIRN142 3
  • Mir-142 3
  • RF01896 168

External Ids for MIR142 Gene

Previous HGNC Symbols for MIR142 Gene

  • MIRN142

Previous GeneCards Identifiers for MIR142 Gene

  • GC17M053766
  • GC17M056409

Summaries for MIR142 Gene

Entrez Gene Summary for MIR142 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR142 Gene

MIR142 (MicroRNA 142) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR142 include Brain Cancer and Endometriosis.

Rfam classification for MIR142 Gene

Additional gene information for MIR142 Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR142 Gene

Genomics for MIR142 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for MIR142 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J058328 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -6.2 -6190 21 ARHGAP35 CEBPG SP1 HNRNPL CREB1 CTCF PRDM10 ZNF512 RFX1 LEF1 TSPOAP1 MN297491 MIR4736 TSPOAP1-AS1 SRSF1 MKS1 SMG8 SUPT4H1 VEZF1 TRIM37
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIR142 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIR142 Gene

Genomic Locations for MIR142 Gene
chr17:58,331,222-58,331,327
(GRCh38/hg38)
Size:
106 bases
Orientation:
Minus strand
chr17:56,408,245-56,409,869
(GRCh37/hg19)
Size:
1,625 bases
Orientation:
Minus strand

Genomic View for MIR142 Gene

Genes around MIR142 on UCSC Golden Path with GeneCards custom track
MIR142 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MIR142 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR142 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR142 Gene

Proteins for MIR142 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR142 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR142 Gene

Domains & Families for MIR142 Gene

Gene Families for MIR142 Gene

HGNC:
genes like me logo Genes that share domains with MIR142: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIR142 Gene

Function for MIR142 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for MIR142 Gene

Gene Ontology (GO) - Molecular Function for MIR142 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA 22870299
genes like me logo Genes that share ontologies with MIR142: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR142 Gene

Localization for MIR142 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIR142 gene
Compartment Confidence
plasma membrane 2
extracellular 2
cytoskeleton 2
mitochondrion 2
nucleus 2
endosome 2
cytosol 2
peroxisome 1
endoplasmic reticulum 1
lysosome 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for MIR142 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 25203061
genes like me logo Genes that share ontologies with MIR142: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for MIR142 Gene

Pathways & Interactions for MIR142 Gene

PathCards logo

SuperPathways for MIR142 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIR142 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032496 response to lipopolysaccharide ISS 28100738
GO:0034612 response to tumor necrosis factor ISS 28100738
GO:0035195 gene silencing by miRNA IDA,IEA --
GO:0050712 negative regulation of interleukin-1 alpha secretion IDA 22870299
GO:0050728 negative regulation of inflammatory response IDA 22870299
genes like me logo Genes that share ontologies with MIR142: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIR142 Gene

Drugs & Compounds for MIR142 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR142 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIR142 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002620A7_9606 miRNA 23 6

RefSeq: NR_029683,

LncBase: hsa-miR-142-3p,

miRBase: MIMAT0000434,

MirGeneDB: Hsa-Mir-142-v3_3p,

TarBase: hsa-miR-142-3p,

ENA: AJ535836.1:1..23:ncRNA, LC194526.1:1057..1079:ncRNA, LM379052.1:1..23:ncRNA, LM608498.1:52..74:ncRNA,

URS00001E0AEA_9606 miRNA 21 6

RefSeq: NR_029683,

LncBase: hsa-miR-142-5p,

miRBase: MIMAT0000433,

MirGeneDB: Hsa-Mir-142-v1_5p,

TarBase: hsa-miR-142-5p,

ENA: LC194526.1:1021..1041:ncRNA, LM379051.1:1..21:ncRNA, LM608498.1:16..36:ncRNA,

URS000075AE07_9606 precursor_RNA 87 5

HGNC: 31529,

RefSeq: NR_029683,

Ensembl: ENST00000384835 (view in UCSC) ,

miRBase: MI0000458,

ENA: LC194526.1:1006..1092:precursor_RNA, LM608498.1:1..87:precursor_RNA,

URS000063AE53_9606 precursor_RNA 106 1

Rfam: RF01896,

URS0000EFD752_9606 precursor_RNA 64 1

MirGeneDB: Hsa-Mir-142-v4,

MIR142 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIR142 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR142 Gene

No ASD Table

Relevant External Links for MIR142 Gene

GeneLoc Exon Structure for
MIR142

Expression for MIR142 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR142 Gene

mRNA expression in normal human tissues for MIR142 Gene
mRNA expression by GTEx for MIR142 Gene

mRNA differential expression in normal tissues according to GTEx for MIR142 Gene

This gene is overexpressed in Whole Blood (x17.7) and Spleen (x9.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIR142

Evidence on tissue expression from TISSUES for MIR142 Gene

  • Blood(2.5)
  • Heart(2.1)
  • Liver(2)
  • Lymph node(2)
genes like me logo Genes that share expression patterns with MIR142: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR142 Gene

Orthologs for MIR142 Gene

Evolution for MIR142 Gene

ENSEMBL:
Gene Tree for MIR142 (if available)
TreeFam:
Gene Tree for MIR142 (if available)

No data available for Orthologs for MIR142 Gene

Paralogs for MIR142 Gene

No data available for Paralogs for MIR142 Gene

Variants for MIR142 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for MIR142 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR142 Gene

Variant ID Type Subtype PubMed ID
nsv457860 CNV loss 19166990
nsv509663 CNV insertion 20534489
nsv517229 CNV gain+loss 19592680
nsv575799 CNV loss 21841781

Additional Variant Information for MIR142 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR142

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIR142 Gene

Disorders for MIR142 Gene

MalaCards: The human disease database

(151) MalaCards diseases for MIR142 Gene - From: miR2Disease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
brain cancer
  • adult brain tumor
endometriosis
multiple sclerosis
  • multiple sclerosis, susceptibility to
psoriasis
systemic lupus erythematosus
  • sle
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIR142

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with MIR142: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR142 Gene

Publications for MIR142 Gene

  1. Human autophagy gene ATG16L1 is post-transcriptionally regulated by MIR142-3p. (PMID: 24401604) Zhai Z … Kwon JH (Autophagy 2014) 2 3
  2. BRD4 promotes glioma cell stemness via enhancing miR-142-5p-mediated activation of Wnt/β-catenin signaling. (PMID: 31724259) Wang J … Dong D (Environmental toxicology 2020) 3
  3. miR-142-3p as tumor suppressor miRNA in the regulation of tumorigenicity, invasion and migration of human breast cancer by targeting Bach-1 expression. (PMID: 30480817) Mansoori B … Baradaran B (Journal of cellular physiology 2019) 3
  4. Downregulation of miR-142-5p promotes tumor metastasis through directly regulating CYR61 expression in gastric cancer. (PMID: 30178386) Yan J … Lu Y (Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association 2019) 3
  5. MicroRNA-142-3p/MALAT1 inhibits lung cancer progression through repressing β-catenin expression. (PMID: 30970294) Liu J … Zhang J (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2019) 3

ExternalLinks

View latest publications for MIR142 gene in Mastermind

Products for MIR142 Gene

Sources for MIR142 Gene