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Aliases for MIR1302-3 Gene

Subcategory (RNA class) for MIR1302-3 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR1302-3 Gene

  • MicroRNA 1302-3 2 3 5
  • Hsa-Mir-1302-3 3
  • MIRN1302-3 3

External Ids for MIR1302-3 Gene

Previous HGNC Symbols for MIR1302-3 Gene

  • MIRN1302-3

Previous GeneCards Identifiers for MIR1302-3 Gene

  • GC00U923161
  • GC02M114059
  • GC02M114340

Summaries for MIR1302-3 Gene

Entrez Gene Summary for MIR1302-3 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1302-3 Gene

MIR1302-3 (MicroRNA 1302-3) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR1302-3 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1302-3 Gene

Genomics for MIR1302-3 Gene

GeneHancer (GH) Regulatory Elements for MIR1302-3 Gene

Promoters and enhancers for MIR1302-3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I113582 Promoter/Enhancer 1.6 Ensembl ENCODE 550.8 -0.8 -788 2.9 HDGF SMAD1 MLX ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 ZBTB7B WASH2P MIR1302-3 RABL2A RPS20P11 RNU6-744P ENSG00000233479 DDX11L2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR1302-3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR1302-3 Gene

Genomic Locations for MIR1302-3 Gene
chr2:113,582,959-113,583,096
(GRCh38/hg38)
Size:
138 bases
Orientation:
Minus strand
chr2:114,340,536-114,340,673
(GRCh37/hg19)

Genomic View for MIR1302-3 Gene

Genes around MIR1302-3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1302-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1302-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1302-3 Gene

ORGUL Member Location for MIR1302-3 Gene

ORGUL Member Location for MIR1302-3 gene

Proteins for MIR1302-3 Gene

Post-translational modifications for MIR1302-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1302-3 Gene

Domains & Families for MIR1302-3 Gene

Gene Families for MIR1302-3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1302-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1302-3 Gene

Function for MIR1302-3 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1302-3 Gene

Localization for MIR1302-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR1302-3 Gene

Pathways & Interactions for MIR1302-3 Gene

SuperPathways for MIR1302-3 Gene

No Data Available

Interacting Proteins for MIR1302-3 Gene

Gene Ontology (GO) - Biological Process for MIR1302-3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1302-3 Gene

Drugs & Compounds for MIR1302-3 Gene

No Compound Related Data Available

Transcripts for MIR1302-3 Gene

mRNA/cDNA for MIR1302-3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1302-3 Gene

No ASD Table

Relevant External Links for MIR1302-3 Gene

GeneLoc Exon Structure for
MIR1302-3
ECgene alternative splicing isoforms for
MIR1302-3

Expression for MIR1302-3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1302-3 Gene

genes like me logo Genes that share expression patterns with MIR1302-3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1302-3 Gene

Orthologs for MIR1302-3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR1302-3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-1302-3 34 34
  • 99 (a)
ManyToMany
ptr-mir-1302-2 34
  • 96 (a)
ManyToMany
ptr-mir-1302-5 34
  • 96 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 34
  • 70 (a)
OneToMany
Species where no ortholog for MIR1302-3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR1302-3 Gene

ENSEMBL:
Gene Tree for MIR1302-3 (if available)
TreeFam:
Gene Tree for MIR1302-3 (if available)

Paralogs for MIR1302-3 Gene

No data available for Paralogs for MIR1302-3 Gene

Variants for MIR1302-3 Gene

Sequence variations from dbSNP and Humsavar for MIR1302-3 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1005475163 -- 113,582,600(-) C/G downstream_transcript_variant
rs1018515693 -- 113,582,632(-) C/A downstream_transcript_variant
rs1033005096 -- 113,583,234(-) TTTCTTTCTTT/TTTCTTT upstream_transcript_variant
rs10439392 -- 113,582,575(-) A/G downstream_transcript_variant
rs10439393 -- 113,582,582(-) G/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR1302-3 Gene

Variant ID Type Subtype PubMed ID
nsv961640 CNV duplication 23825009
nsv954795 CNV duplication 24416366
nsv821507 CNV duplication 20802225
nsv582714 CNV gain 21841781
nsv1154012 CNV duplication 26484159
nsv1132503 CNV duplication 24896259
nsv1124810 CNV duplication 24896259
nsv1076493 CNV duplication 25765185
nsv10133 CNV gain 18304495
esv3592016 CNV gain 21293372
esv3415262 CNV duplication 20981092
esv3349788 CNV duplication 20981092
esv2759085 CNV gain+loss 17122850
esv24774 CNV gain 19812545
dgv1165e212 CNV loss 25503493
dgv1164e212 CNV loss 25503493

Additional Variant Information for MIR1302-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1302-3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1302-3 Gene

Disorders for MIR1302-3 Gene

Additional Disease Information for MIR1302-3

No disorders were found for MIR1302-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1302-3 Gene

Publications for MIR1302-3 Gene

  1. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin RD … Marra MA (Genome research 2008) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR1302-3 Gene

Sources for MIR1302-3 Gene

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