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Aliases for MIR1272 Gene

Subcategory (RNA class) for MIR1272 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR1272 Gene

  • MicroRNA 1272 2 3 5
  • Hsa-Mir-1272 3
  • Mir-1272 3
  • MIRN1272 3

External Ids for MIR1272 Gene

Previous HGNC Symbols for MIR1272 Gene

  • MIRN1272

Previous GeneCards Identifiers for MIR1272 Gene

  • GC00U922969
  • GC15M062842
  • GC15M065054

Summaries for MIR1272 Gene

Entrez Gene Summary for MIR1272 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR1272 Gene

MIR1272 (MicroRNA 1272) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR1272 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1272 Gene

Genomics for MIR1272 Gene

GeneHancer (GH) Regulatory Elements for MIR1272 Gene

Promoters and enhancers for MIR1272 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I064759 Enhancer 0.5 dbSUPER 550.8 +0.2 201 5.1 SKI SCRT2 ZNF239 SMAD4 HNF4A BCL6 RARA MIR1272 TRIP4 RBPMS2 RNU6-549P ANKDD1A OAZ2
GH15I064988 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.7 -227.9 -227893 4.3 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ARID4B SIN3A DMAP1 IRF4 SPG21 CSNK1G1 ZNF609 INTS14 PARP16 SLC24A1 ENSG00000259635 MTFMT PDCD7 RBPMS2
GH15I064730 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.8 +30.5 30540 2 PKNOX1 FOXA2 ARID4B SIN3A BRCA1 ZNF48 TCF12 SLC30A9 ARID2 ZNF207 TRIP4 MIR1272 RBPMS2 RNU6-549P ENSG00000249240 PLEKHO2 PIF1 SNX1 OAZ2
GH15I065048 Promoter/Enhancer 1.4 Ensembl ENCODE 9.6 -287.4 -287371 1.9 HDAC1 PKNOX1 ATF1 RB1 NEUROD1 SIN3A BMI1 KLF5 ZBTB7B IRF4 ENSG00000277351 SPG21 UBAP1L CSNK1G1 MTFMT KBTBD13 RASL12 ENSG00000259635 ZNF609 MIR1272
GH15I065053 Enhancer 1.3 Ensembl ENCODE dbSUPER 9.6 -292.7 -292663 2.4 PKNOX1 ARID4B SIN3A ZNF48 YY1 ARID2 ZNF143 DEK RXRA SP5 UBAP1L SPG21 MTFMT KBTBD13 RASL12 RNU5B-1 RBPMS2 MIR1272 ENSG00000277351 PIR51727
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR1272 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR1272 Gene

Genomic Locations for MIR1272 Gene
chr15:64,762,387-64,762,515
(GRCh38/hg38)
Size:
129 bases
Orientation:
Minus strand
chr15:65,054,586-65,054,714
(GRCh37/hg19)

Genomic View for MIR1272 Gene

Genes around MIR1272 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1272 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1272 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1272 Gene

ORGUL Member Location for MIR1272 Gene

ORGUL Member Location for MIR1272 gene

Proteins for MIR1272 Gene

Post-translational modifications for MIR1272 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1272 Gene

Domains & Families for MIR1272 Gene

Gene Families for MIR1272 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR1272: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1272 Gene

Function for MIR1272 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1272 Gene

Localization for MIR1272 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR1272 Gene

Pathways & Interactions for MIR1272 Gene

SuperPathways for MIR1272 Gene

No Data Available

Interacting Proteins for MIR1272 Gene

Gene Ontology (GO) - Biological Process for MIR1272 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1272 Gene

Drugs & Compounds for MIR1272 Gene

No Compound Related Data Available

Transcripts for MIR1272 Gene

mRNA/cDNA for MIR1272 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1272 Gene

No ASD Table

Relevant External Links for MIR1272 Gene

GeneLoc Exon Structure for
MIR1272
ECgene alternative splicing isoforms for
MIR1272

Expression for MIR1272 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR1272 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR1272 Gene:

MIR1272
genes like me logo Genes that share expression patterns with MIR1272: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1272 Gene

Orthologs for MIR1272 Gene

Evolution for MIR1272 Gene

ENSEMBL:
Gene Tree for MIR1272 (if available)
TreeFam:
Gene Tree for MIR1272 (if available)

No data available for Orthologs for MIR1272 Gene

Paralogs for MIR1272 Gene

No data available for Paralogs for MIR1272 Gene

Variants for MIR1272 Gene

Sequence variations from dbSNP and Humsavar for MIR1272 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000117598 -- 64,762,421(-) C/T non_coding_transcript_variant
rs1000453476 -- 64,762,060(-) C/T downstream_transcript_variant
rs1002006649 -- 64,762,340(-) G/A downstream_transcript_variant
rs1002620081 -- 64,764,223(-) C/G upstream_transcript_variant
rs1003556980 -- 64,762,735(-) T/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR1272 Gene

Variant ID Type Subtype PubMed ID
dgv31n68 CNV loss 17160897
nsv528510 CNV loss 19592680
nsv569703 CNV loss 21841781

Additional Variant Information for MIR1272 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1272

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1272 Gene

Disorders for MIR1272 Gene

Additional Disease Information for MIR1272

No disorders were found for MIR1272 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1272 Gene

Publications for MIR1272 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin RD … Marra MA (Genome research 2008) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR1272 Gene

Sources for MIR1272 Gene

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