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Aliases for MIR125B1 Gene

Subcategory (RNA class) for MIR125B1 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR125B1 Gene

  • MicroRNA 125b-1 2 3 5
  • Hsa-Mir-125b-1 3
  • Mir-125b-1 3
  • MIRN125B1 3

External Ids for MIR125B1 Gene

Previous HGNC Symbols for MIR125B1 Gene

  • MIRN125B1

Previous GeneCards Identifiers for MIR125B1 Gene

  • GC11M121478
  • GC11M121970

Summaries for MIR125B1 Gene

Entrez Gene Summary for MIR125B1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR125B1 Gene

MIR125B1 (MicroRNA 125b-1) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Mesodermal Commitment Pathway and Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins..

Additional gene information for MIR125B1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR125B1 Gene

Genomics for MIR125B1 Gene

GeneHancer (GH) Regulatory Elements for MIR125B1 Gene

Promoters and enhancers for MIR125B1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I122090 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 550.8 +1.2 1178 16.4 CTCF MXI1 USF1 FOXA2 EBF1 RAD21 JUND POLR2A ZNF143 RCOR1 GC11M122095 GC11M122101 MIR125B1 MIR100HG GC11P122103
GH11I122043 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +54.0 54044 3.6 JUND JUN FOS BLID MIR100HG MIR125B1 GC11P122016 GC11P122071
GH11I122069 Enhancer 1 Ensembl ENCODE dbSUPER 10.6 +29.7 29666 1.2 PKNOX1 MXI1 RFX1 MAX BMI1 RFX3 POLR2A RCOR1 CHD2 GC11P122071 MIR125B1 GC11P122016 MIR100HG
GH11I122037 Enhancer 0.9 Ensembl ENCODE dbSUPER 10.8 +60.5 60526 3.3 JUND USF1 POLR2A POU5F1 MIR125B1 GC11P122016 GC11P122071 MIR100HG
GH11I122035 Enhancer 0.8 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +63.5 63538 1.3 MIR125B1 GC11P122016 GC11P122071 MIR100HG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR125B1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR125B1 Gene

Genomic Locations for MIR125B1 Gene
chr11:122,099,757-122,099,844
(GRCh38/hg38)
Size:
88 bases
Orientation:
Minus strand
chr11:121,970,465-121,970,552
(GRCh37/hg19)

Genomic View for MIR125B1 Gene

Genes around MIR125B1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR125B1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR125B1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR125B1 Gene

Proteins for MIR125B1 Gene

Post-translational modifications for MIR125B1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR125B1 Gene

Domains & Families for MIR125B1 Gene

Gene Families for MIR125B1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR125B1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR125B1 Gene

Function for MIR125B1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR125B1 Gene

Localization for MIR125B1 Gene

Gene Ontology (GO) - Cellular Components for MIR125B1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 26646931
genes like me logo Genes that share ontologies with MIR125B1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MIR125B1 Gene

Pathways & Interactions for MIR125B1 Gene

genes like me logo Genes that share pathways with MIR125B1: view

Pathways by source for MIR125B1 Gene

Interacting Proteins for MIR125B1 Gene

Gene Ontology (GO) - Biological Process for MIR125B1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1905065 positive regulation of vascular smooth muscle cell differentiation IMP 18548003
genes like me logo Genes that share ontologies with MIR125B1: view

No data available for SIGNOR curated interactions for MIR125B1 Gene

Drugs & Compounds for MIR125B1 Gene

No Compound Related Data Available

Transcripts for MIR125B1 Gene

mRNA/cDNA for MIR125B1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR125B1 Gene

No ASD Table

Relevant External Links for MIR125B1 Gene

GeneLoc Exon Structure for
MIR125B1
ECgene alternative splicing isoforms for
MIR125B1

Expression for MIR125B1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR125B1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR125B1 Gene:

MIR125B1
genes like me logo Genes that share expression patterns with MIR125B1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR125B1 Gene

Orthologs for MIR125B1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR125B1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-125b-1 34
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir125b-1 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia cfa-mir-125b-1 34
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia mdo-mir-125b-2 34
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia bta-mir-125b-1 34
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia oan-mir-125 34
  • 78 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 34
  • 93 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia aca-mir-125b-1 34
  • 90 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii dre-mir-125b-2 34
  • 76 (a)
OneToOne
Species where no ortholog for MIR125B1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIR125B1 Gene

ENSEMBL:
Gene Tree for MIR125B1 (if available)
TreeFam:
Gene Tree for MIR125B1 (if available)

Paralogs for MIR125B1 Gene

No data available for Paralogs for MIR125B1 Gene

Variants for MIR125B1 Gene

Sequence variations from dbSNP and Humsavar for MIR125B1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000150146 -- 122,100,153(-) A/G upstream_transcript_variant
rs1002658336 -- 122,101,078(-) A/G upstream_transcript_variant
rs1003328934 -- 122,100,466(-) G/A upstream_transcript_variant
rs1003694286 -- 122,100,811(-) G/A upstream_transcript_variant
rs1004303700 -- 122,100,853(-) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR125B1 Gene

Variant ID Type Subtype PubMed ID
dgv17n68 CNV gain 17160897

Additional Variant Information for MIR125B1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR125B1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR125B1 Gene

Disorders for MIR125B1 Gene

Additional Disease Information for MIR125B1

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for MIR125B1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR125B1 Gene

Publications for MIR125B1 Gene

  1. Novel genetic variants in microRNA genes and familial breast cancer. (PMID: 19048628) Shen J … Zhao H (International journal of cancer 2009) 3 44 58
  2. DNA methylation contributes to deregulation of 12 cancer-associated microRNAs and breast cancer progression. (PMID: 27998789) Pronina IV … Braga EA (Gene 2017) 3 58
  3. RNA-Seq Identifies Circulating miR-125a-5p, miR-125b-5p, and miR-143-3p as Potential Biomarkers for Acute Ischemic Stroke. (PMID: 28724745) Tiedt S … Dichgans M (Circulation research 2017) 3 58
  4. miR-16 and miR-125b are involved in barrier function dysregulation through the modulation of claudin-2 and cingulin expression in the jejunum in IBS with diarrhoea. (PMID: 28082316) Martínez C … Santos J (Gut 2017) 3 58
  5. Low tissue levels of miR-125b predict malignancy in solitary fibrous tumors of the pleura. (PMID: 28253927) Brock M … Franzen DP (Respiratory research 2017) 3 58

Products for MIR125B1 Gene

Sources for MIR125B1 Gene

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