Aliases for MIR1238 Gene
Subcategory (RNA class) for MIR1238 Gene
miRNA
Quality Score for this RNA gene is
3
External Ids for MIR1238 Gene
- HGNC: 33933
- Entrez Gene: 100302226
- Ensembl: ENSG00000221410
- miRBase: hsa-mir-1238
Previous HGNC Symbols for MIR1238 Gene
- MIRN1238
Previous GeneCards Identifiers for MIR1238 Gene
- GC00U922934
- GC19P010664
Summaries for MIR1238 Gene
-
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
GeneCards Summary for MIR1238 Gene
MIR1238 (MicroRNA 1238) is an RNA Gene, and is affiliated with the miRNA class.
Additional gene information for MIR1238 Gene
No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1238 Gene
Genomics for MIR1238 Gene
GeneHancer (GH) Regulatory Elements for MIR1238 Gene
Promoters and enhancers for MIR1238 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH19I010551 | Enhancer | 0.2 | ENCODE | 550.8 | -1.0 | -1009 | 0.2 | GC19M010552 MIR1238 RNU7-140P KRI1 ATG4D | ||
| GH19I010514 | Promoter/Enhancer | 2.4 | EPDnew FANTOM5 Ensembl ENCODE dbSUPER | 12 | -34.9 | -34906 | 5.2 | FOXA2 ZNF48 ZNF121 GLIS2 KLF7 ZNF263 SP3 ZNF623 ZNF610 GLIS1 | S1PR5 LOC100419831 ILF3 KRI1 QTRT1 ATG4D ZNF846 CDKN2D SLC44A2 ZNF562 | |
| GH19I010515 | Enhancer | 0.7 | ENCODE dbSUPER | 12 | -37.8 | -37802 | 0.2 | CTCF POLR2A ZBTB33 EZH2 | ATG4D KRI1 CDKN2D RNU7-140P MIR1238 ILF3 SLC44A2 S1PR5 KEAP1 | |
| GH19I010552 | Enhancer | 1.3 | Ensembl ENCODE dbSUPER | 0.8 | +2.0 | 2015 | 5.3 | HDGF PKNOX1 FOXA2 POLR2B GLIS2 FOS RUNX3 NFYC MYNN GLIS1 | KRI1 CDKN2D SLC44A2 ILF3 QTRT1 ILF3-AS1 MIR1238 ATG4D |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around MIR1238 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for MIR1238 Gene
Genomic Locations for MIR1238 Gene
- chr19:10,552,122-10,552,204
- (GRCh38/hg38)
- Size:
- 83 bases
- Orientation:
- Plus strand
- chr19:10,662,798-10,662,880
- (GRCh37/hg19)
Genomic View for MIR1238 Gene
Genes around MIR1238 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19p13.2 by Ensembl
- 19p13.2 by Entrez Gene
- 19p13.2 by HGNC
MIR1238 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for MIR1238 Gene
Proteins for MIR1238 Gene
Post-translational modifications for MIR1238 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for MIR1238
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for MIR1238
- Origene Custom Protein Services for MIR1238
- Search GeneTex for Proteins for MIR1238
No data available for DME Specific Peptides for MIR1238 Gene
Domains & Families for MIR1238 Gene
Gene Families for MIR1238 Gene
- HGNC:
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1238 Gene
Function for MIR1238 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for MIR1238
-
- Search ViGene Biosciences for MIR1238
CRISPR Products
- Browse CRISPR knockouts for MIR1238
- Applied Biological Materials CRISPR for MIR1238
-
Vectors and viruses for KO, Activation, Repression, and more
Inhibitory RNA Products
- Search ViGene Biosciences for MIR1238
Clone Products
- GenScript: Custom all cDNA clones Services for MIR1238
- VectorBuilder custom plasmid, inducible vectors for MIR1238
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MIR1238
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for MIR1238
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1238 Gene
Localization for MIR1238 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR1238 Gene
Transcripts for MIR1238 Gene
mRNA/cDNA for MIR1238 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for MIR1238
- Applied Biological Materials CRISPR for MIR1238
-
Vectors and viruses for KO, Activation, Repression, and more
Inhibitory RNA Products
- Search ViGene Biosciences for MIR1238
Clone Products
- GenScript: Custom all cDNA clones Services for MIR1238
- VectorBuilder custom plasmid, inducible vectors for MIR1238
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MIR1238
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for MIR1238
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for MIR1238 Gene
NURSA nuclear receptor signaling pathways regulating expression of MIR1238 Gene:
MIR1238Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1238 Gene
Orthologs for MIR1238 Gene
No data available for Orthologs for MIR1238 Gene
Paralogs for MIR1238 Gene
No data available for Paralogs for MIR1238 Gene
Variants for MIR1238 Gene
| SNP ID | Clin | Chr 19 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1001239575 | -- | 10,550,618(+) | T/G | upstream_transcript_variant | |
| rs1001487489 | -- | 10,551,174(+) | A/G | upstream_transcript_variant | |
| rs1001587434 | -- | 10,550,378(+) | G/A | upstream_transcript_variant | |
| rs1001961637 | -- | 10,550,985(+) | T/A/C | upstream_transcript_variant | |
| rs1003700029 | -- | 10,552,481(+) | G/A | downstream_transcript_variant |
Additional Variant Information for MIR1238 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- MIR1238
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1238 Gene
Disorders for MIR1238 Gene
Additional Disease Information for MIR1238
No disorders were found for MIR1238 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1238 Gene
Publications for MIR1238 Gene
- Altered Expressions of miR-1238-3p, miR-494, miR-6069, and miR-139-3p in the Formation of Chronic Brucellosis. (PMID: 27722176) Budak F … Oral HB (Journal of immunology research 2016) 3 58
- miR-1238 inhibits cell proliferation by targeting LHX2 in non-small cell lung cancer. (PMID: 26189214) Shi X … Zhang HT (Oncotarget 2015) 3 58
- Mammalian mirtron genes. (PMID: 17964270) Berezikov E … Lai EC (Molecular cell 2007) 3 58
- miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58
Products for MIR1238 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Human Proteins and Enzymes
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for MIR1238
- Origene Custom Protein Services for MIR1238
- Browse OriGene Inhibitory RNA Products For MIR1238
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for MIR1238
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For MIR1238
- GenScript: Custom all cDNA clones Services for MIR1238
- GenScript Custom Purified and Recombinant Proteins Services for MIR1238
- GenScript Custom Assay Services for MIR1238
- GenScript Custom overexpressing Cell Line Services for MIR1238
- Browse GenScript CRISPR for MIR1238
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for MIR1238
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse Sino Biological ELISA Kits
- Browse Sino Biological ELISA Pair Sets
- Browse Sino Biological CRO Services
- Browse Sino Biological Control Vectors
- Sino Biological Transfection Reagent
- Sino Biological Anti-His Tag Antibody
- Browse Antibodies at Cloud-Clone Corp.
- Browse Proteins at Cloud-Clone Corp.
- Browse Assay Kits at Cloud-Clone Corp.
- Browse Knockouts at Cloud-Clone Corp.
- Browse Knockins at Cloud-Clone Corp.
- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for MIR1238
- VectorBuilder custom plasmid, inducible vectors for MIR1238
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MIR1238
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for MIR1238
- Search GeneTex for Proteins for MIR1238
Sources for MIR1238 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew