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Aliases for MIR1-1HG-AS1 Gene

Subcategory (RNA class) for MIR1-1HG-AS1 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR1-1HG-AS1 Gene

  • MIR1-1HG Antisense RNA 1 2 3
  • C20orf166 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C20orf166 Antisense RNA 1 2 5
  • C20orf166-AS1 3 5
  • Chromosome 20 Open Reading Frame 200 2
  • Non-Protein Coding RNA 335 2
  • NCRNA00335 3
  • C20orf200 3

External Ids for MIR1-1HG-AS1 Gene

Previous HGNC Symbols for MIR1-1HG-AS1 Gene

  • C20orf200
  • NCRNA00335
  • C20orf166-AS1

Summaries for MIR1-1HG-AS1 Gene

GeneCards Summary for MIR1-1HG-AS1 Gene

MIR1-1HG-AS1 (MIR1-1HG Antisense RNA 1) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR1-1HG-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR1-1HG-AS1 Gene

Genomics for MIR1-1HG-AS1 Gene

GeneHancer (GH) Regulatory Elements for MIR1-1HG-AS1 Gene

Promoters and enhancers for MIR1-1HG-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I062641 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11 -93.8 -93821 8 HDGF PKNOX1 CLOCK MLX ZFP64 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 SLCO4A1 MRGBP TAF4 GMEB2 SLCO4A1-AS1 OGFR OGFR-AS1 MIR1-1 MIR1-1HG MIR1-1HG-AS1
GH20I062649 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -100.5 -100531 4.7 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARID4B NEUROD1 SIN3A FEZF1 ENSG00000276317 ENSG00000277496 OGFR YTHDF1 OGFR-AS1 MTG2 MIR1-1 MIR1-1HG MIR1-1HG-AS1 DIDO1
GH20I062425 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 11 +122.6 122550 6.4 HDGF CLOCK FOXA2 NEUROD1 SIN3A ZBTB7B ZNF207 SP5 REST ZNF592 LOC105372710 RBBP8NL CABLES2 DIDO1 ARFGAP1 RPS21 YTHDF1 TAF4 LAMA5 MIR1-1
GH20I062589 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 17.3 -38.6 -38617 1.8 ELK4 MXI1 MAZ SMARCC1 MAX PAX8 MNT SMARCB1 RAD21 GABPA MIR1-1HG MIR1-1HG-AS1 MIR133A2 ENSG00000229882 ENSG00000232121 MIR1-1 ENSG00000264490 WI2-87327B8.2
GH20I062738 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -189.1 -189123 4.9 ATF1 PKNOX1 SIN3A IRF4 ZNF766 GLIS2 ELK1 ZNF143 ATF7 FOS OGFR NTSR1 LINC00659 LINC00686 OGFR-AS1 MIR1-1 MIR1-1HG-AS1 MIR1-1HG ENSG00000229882 ENSG00000232121
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR1-1HG-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR1-1HG-AS1 Gene

Genomic Locations for MIR1-1HG-AS1 Gene
chr20:62,543,070-62,551,561
(GRCh38/hg38)
Size:
8,492 bases
Orientation:
Minus strand
chr20:61,141,438-61,148,768
(GRCh37/hg19)

Genomic View for MIR1-1HG-AS1 Gene

Genes around MIR1-1HG-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR1-1HG-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR1-1HG-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR1-1HG-AS1 Gene

Proteins for MIR1-1HG-AS1 Gene

Post-translational modifications for MIR1-1HG-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR1-1HG-AS1 Gene

Domains & Families for MIR1-1HG-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR1-1HG-AS1 Gene

Function for MIR1-1HG-AS1 Gene

Phenotypes for MIR1-1HG-AS1 Gene

genes like me logo Genes that share phenotypes with MIR1-1HG-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR1-1HG-AS1 Gene

Localization for MIR1-1HG-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR1-1HG-AS1 Gene

Pathways & Interactions for MIR1-1HG-AS1 Gene

SuperPathways for MIR1-1HG-AS1 Gene

No Data Available

Interacting Proteins for MIR1-1HG-AS1 Gene

Gene Ontology (GO) - Biological Process for MIR1-1HG-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR1-1HG-AS1 Gene

Drugs & Compounds for MIR1-1HG-AS1 Gene

No Compound Related Data Available

Transcripts for MIR1-1HG-AS1 Gene

mRNA/cDNA for MIR1-1HG-AS1 Gene

(1) REFSEQ mRNAs :
(14) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR1-1HG-AS1 Gene

No ASD Table

Relevant External Links for MIR1-1HG-AS1 Gene

GeneLoc Exon Structure for
MIR1-1HG-AS1
ECgene alternative splicing isoforms for
MIR1-1HG-AS1

Expression for MIR1-1HG-AS1 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR1-1HG-AS1 Gene

Orthologs for MIR1-1HG-AS1 Gene

Evolution for MIR1-1HG-AS1 Gene

ENSEMBL:
Gene Tree for MIR1-1HG-AS1 (if available)
TreeFam:
Gene Tree for MIR1-1HG-AS1 (if available)

No data available for Orthologs for MIR1-1HG-AS1 Gene

Paralogs for MIR1-1HG-AS1 Gene

No data available for Paralogs for MIR1-1HG-AS1 Gene

Variants for MIR1-1HG-AS1 Gene

Sequence variations from dbSNP and Humsavar for MIR1-1HG-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000363415 -- 62,550,862(-) C/T intron_variant
rs1000437018 -- 62,550,735(-) T/C intron_variant
rs1000635568 -- 62,551,516(-) G/A/C non_coding_transcript_variant
rs1000705956 -- 62,551,977(-) A/T upstream_transcript_variant
rs1000770001 -- 62,551,755(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR1-1HG-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4343n100 CNV gain 25217958
dgv4344n100 CNV gain 25217958
esv2422398 CNV duplication 17116639
nsv1072554 CNV deletion 25765185
nsv459065 CNV gain 19166990
nsv459068 CNV gain 19166990
nsv470556 CNV loss 18288195
nsv586496 CNV gain 21841781
nsv586501 CNV gain 21841781
nsv953302 CNV deletion 24416366

Additional Variant Information for MIR1-1HG-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR1-1HG-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR1-1HG-AS1 Gene

Disorders for MIR1-1HG-AS1 Gene

Additional Disease Information for MIR1-1HG-AS1

No disorders were found for MIR1-1HG-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR1-1HG-AS1 Gene

Publications for MIR1-1HG-AS1 Gene

  1. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles RA … Easton DF (Nature genetics 2013) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for MIR1-1HG-AS1 Gene

Sources for MIR1-1HG-AS1 Gene

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