Aliases for MIMT1 Gene

Subcategory (RNA class) for MIMT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for MIMT1 Gene

  • MER1 Repeat Containing Imprinted Transcript 1 2 3 5
  • MER1 Repeat Containing Imprinted Transcript 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 67 2 3
  • MIMT1 2 168
  • Non-Protein Coding RNA 67 2
  • NONHSAG026650 92
  • HSALNG0127793 167
  • NCRNA00067 3
  • LINC00067 3
  • MIM1 3

External Ids for MIMT1 Gene

Previous GeneCards Identifiers for MIMT1 Gene

  • GC19U900733
  • GC19P057352
  • GC19P053661

Summaries for MIMT1 Gene

GeneCards Summary for MIMT1 Gene

MIMT1 (MER1 Repeat Containing Imprinted Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for MIMT1 Gene

  • MER1 repeat containing imprinted transcript 1 conserved region 1

Additional gene information for MIMT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIMT1 Gene

Genomics for MIMT1 Gene

GeneHancer (GH) Regulatory Elements for MIMT1 Gene

Promoters and enhancers for MIMT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J056836 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 500.7 -1.0 -1021 6.4 POLR2G CTCF TGIF2 ZBTB7A MXI1 KMT2B SIN3A SRSF1 CREB1 USF1 PEG3 ZIM2 MIMT1 lnc-PEG3-5 ZNF264 ZNF548 ZNF805 ZNF587B ZNF586 ZNF550
GH19J056594 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 10.5 -245.4 -245350 2.6 ZNF300 POLR2G PHF8 POLR2A ZBTB10 ZBTB26 ZBTB7A MXI1 ZNF341 ZNF148 ZIM2-AS1 ZNF71 ZNF548 ZNF549 U2AF2 ENSG00000269696 ZNF17 ZNF543 ZFP28 ZNF470
GH19J056847 Enhancer 0.2 CraniofacialAtlas 0.4 +6.9 6882 0.2 ENSG00000274777 MIMT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIMT1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MIMT1 gene promoter:
  • AML1a
  • CREB
  • deltaCREB
  • GATA-1
  • POU2F1
  • Sp1

Genomic Locations for MIMT1 Gene

Genomic Locations for MIMT1 Gene
chr19:56,840,851-56,849,964
(GRCh38/hg38)
Size:
9,114 bases
Orientation:
Plus strand
chr19:57,352,270-57,359,924
(GRCh37/hg19)
Size:
7,655 bases
Orientation:
Plus strand

Genomic View for MIMT1 Gene

Genes around MIMT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIMT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIMT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIMT1 Gene

Proteins for MIMT1 Gene

Post-translational modifications for MIMT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIMT1 Gene

Domains & Families for MIMT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIMT1 Gene

Function for MIMT1 Gene

Phenotypes From GWAS Catalog for MIMT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIMT1 Gene

Localization for MIMT1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIMT1 gene
Compartment Confidence
mitochondrion 2
endosome 2
plasma membrane 1
extracellular 1
cytoskeleton 1
nucleus 1
endoplasmic reticulum 1
cytosol 1
lysosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIMT1 Gene

Pathways & Interactions for MIMT1 Gene

PathCards logo

SuperPathways for MIMT1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for MIMT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIMT1 Gene

Drugs & Compounds for MIMT1 Gene

No Compound Related Data Available

Transcripts for MIMT1 Gene

mRNA/cDNA for MIMT1 Gene

13 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
6 LncBook transcripts :
9 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIMT1 Gene

No ASD Table

Relevant External Links for MIMT1 Gene

GeneLoc Exon Structure for
MIMT1

Expression for MIMT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIMT1 Gene

mRNA differential expression in normal tissues according to GTEx for MIMT1 Gene

This gene is overexpressed in Testis (x9.0) and Brain - Nucleus accumbens (basal ganglia) (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIMT1

SOURCE GeneReport for Unigene cluster for MIMT1 Gene:

Hs.467337
genes like me logo Genes that share expression patterns with MIMT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIMT1 Gene

Orthologs for MIMT1 Gene

Evolution for MIMT1 Gene

ENSEMBL:
Gene Tree for MIMT1 (if available)
TreeFam:
Gene Tree for MIMT1 (if available)

No data available for Orthologs for MIMT1 Gene

Paralogs for MIMT1 Gene

No data available for Paralogs for MIMT1 Gene

Variants for MIMT1 Gene

Additional dbSNP identifiers (rs#s) for MIMT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIMT1 Gene

Variant ID Type Subtype PubMed ID
nsv833884 CNV loss 17160897

Additional Variant Information for MIMT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIMT1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for MIMT1 Gene

Disorders for MIMT1 Gene

Additional Disease Information for MIMT1

No disorders were found for MIMT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIMT1 Gene

Publications for MIMT1 Gene

  1. Imprinting genes associated with endometriosis. (PMID: 26417259) Kobayashi H (EXCLI journal 2014) 2 3 54
  2. Genomic organization and imprinting of the Peg3 domain in bovine. (PMID: 17509818) Kim J … Stubbs L (Genomics 2007) 2 3 54
  3. ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs. (PMID: 20801769) Zhang Y … Qu LH (RNA (New York, N.Y.) 2010) 3 54
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 41 54

Products for MIMT1 Gene

Sources for MIMT1 Gene