Aliases for MIF4GD-DT Gene

Data sources for MIF4GD-DT Gene:

Subcategory (RNA class) for MIF4GD-DT Gene

lncRNA

Aliases for MIF4GD-DT Gene

External Ids for MIF4GD-DT Gene

Summaries for MIF4GD-DT Gene

GeneCards Summary for MIF4GD-DT Gene

MIF4GD-DT (MIF4GD Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MIF4GD-DT include Microcephaly, Amish Type.

Additional gene information for MIF4GD-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MIF4GD-DT Gene

Genomics for MIF4GD-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MIF4GD-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MIF4GD-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MIF4GD-DT Gene

Latest Assembly
chr17:75,271,299-75,273,895
(GRCh38/hg38)
Size:
2,597 bases
Orientation:
Plus strand

Previous Assembly
chr17:73,267,380-73,269,976
(GRCh37/hg19 by Entrez Gene)
Size:
2,597 bases
Orientation:
Plus strand

chr17:73,267,450-73,269,976
(GRCh37/hg19 by Ensembl)
Size:
2,527 bases
Orientation:
Plus strand

Genomic View for MIF4GD-DT Gene

Genes around MIF4GD-DT on UCSC Golden Path with GeneCards custom track
MIF4GD-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MIF4GD-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIF4GD-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIF4GD-DT Gene

Proteins for MIF4GD-DT Gene

Post-translational modifications for MIF4GD-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIF4GD-DT Gene

Domains & Families for MIF4GD-DT Gene

Gene Families for MIF4GD-DT Gene

genes like me logo Genes that share domains with MIF4GD-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MIF4GD-DT Gene

Function for MIF4GD-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIF4GD-DT Gene

Localization for MIF4GD-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIF4GD-DT Gene

Pathways & Interactions for MIF4GD-DT Gene

PathCards logo

SuperPathways for MIF4GD-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for MIF4GD-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MIF4GD-DT Gene

Drugs & Compounds for MIF4GD-DT Gene

No Compound Related Data Available

Transcripts for MIF4GD-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MIF4GD-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075AA2D_9606 lncRNA 2597 2

RefSeq: NR_036520,

NONCODE: NONHSAT055876.2,

URS00001A53A6_9606 lncRNA 546 2

Ensembl: ENST00000582668 (view in UCSC) ,

NONCODE: NONHSAT055877.2,

URS0000212070_9606 lncRNA 2527 1

Ensembl: ENST00000585075 (view in UCSC) ,

MIF4GD-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MIF4GD-DT Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MIF4GD-DT Gene

No ASD Table

Relevant External Links for MIF4GD-DT Gene

GeneLoc Exon Structure for
MIF4GD-DT

Expression for MIF4GD-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MIF4GD-DT

SOURCE GeneReport for Unigene cluster for MIF4GD-DT Gene:

Hs.735738
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIF4GD-DT Gene

Orthologs for MIF4GD-DT Gene

Evolution for MIF4GD-DT Gene

ENSEMBL:
Gene Tree for MIF4GD-DT (if available)
TreeFam:
Gene Tree for MIF4GD-DT (if available)

No data available for Orthologs for MIF4GD-DT Gene

Paralogs for MIF4GD-DT Gene

No data available for Paralogs for MIF4GD-DT Gene

Variants for MIF4GD-DT Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for MIF4GD-DT Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
889454 Uncertain Significance: Amish lethal microcephaly 75,273,043(+) G/A
NM_001126121.2(SLC25A19):c.*408C>T
NON_CODING_TRANSCRIPT_VARIANT,THREE_PRIME_UTR
889455 Uncertain Significance: Amish lethal microcephaly 75,273,067(+) G/A
NM_001126121.2(SLC25A19):c.*384C>T
NON_CODING_TRANSCRIPT_VARIANT,THREE_PRIME_UTR
889456 Likely Benign: Amish lethal microcephaly 75,273,150(+) G/A
NM_001126121.2(SLC25A19):c.*301C>T
NON_CODING_TRANSCRIPT_VARIANT,THREE_PRIME_UTR
889457 Uncertain Significance: Amish lethal microcephaly 75,273,159(+) T/C
NM_001126121.2(SLC25A19):c.*292A>G
NON_CODING_TRANSCRIPT_VARIANT,THREE_PRIME_UTR
890139 Benign: Amish lethal microcephaly 75,273,287(+) C/T
NM_001126121.2(SLC25A19):c.*164G>A
NON_CODING_TRANSCRIPT_VARIANT,THREE_PRIME_UTR

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MIF4GD-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MIF4GD-DT Gene

Variant ID Type Subtype PubMed ID
nsv1066312 CNV gain 25217958
nsv510727 CNV deletion 20534489
nsv576027 CNV gain 21841781

Additional Variant Information for MIF4GD-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIF4GD-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIF4GD-DT Gene

Disorders for MIF4GD-DT Gene

MalaCards: The human disease database

(1) MalaCards diseases for MIF4GD-DT Gene - From: CVR

Disorder Aliases PubMed IDs
microcephaly, amish type
  • mcpha
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIF4GD-DT

Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with MIF4GD-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIF4GD-DT Gene

Publications for MIF4GD-DT Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for MIF4GD-DT Gene

Products for MIF4GD-DT Gene

Sources for MIF4GD-DT Gene