Aliases for MID1IP1-AS1 Gene

Subcategory (RNA class) for MID1IP1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for MID1IP1-AS1 Gene

  • MID1IP1 Antisense RNA 1 2 3 5
  • MID1IP1-AS1 2 5 165
  • MID1IP1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG054250.2 91
  • NONHSAG054249.2 91
  • HSALNG0137338 164

External Ids for MID1IP1-AS1 Gene

Previous GeneCards Identifiers for MID1IP1-AS1 Gene

  • GC00U933498
  • GC0XM038661
  • GC0XM038801

Summaries for MID1IP1-AS1 Gene

GeneCards Summary for MID1IP1-AS1 Gene

MID1IP1-AS1 (MID1IP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for MID1IP1-AS1 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for MID1IP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MID1IP1-AS1 Gene

Genomics for MID1IP1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MID1IP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ038800 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.7 -721 8.2 SP1 HNRNPL CREB1 GATAD2A PRDM10 REST TFE3 RFX1 LEF1 SOX13 MID1IP1 MID1IP1-AS1 NONHSAG054249.2 ENSG00000287729 LOC105373174 lnc-MID1IP1-4
GH0XJ038982 Enhancer 0.7 Ensembl 12.4 -178.3 -178329 1 GABPA CEBPA TGIF2 FOXA2 SAP130 GABPB1 MXD4 SMAD4 HOMEZ MXI1 MID1IP1-AS1 MID1IP1 HSALNG0137345 piR-47162-185 lnc-MID1IP1-2
GH0XJ038985 Enhancer 0.5 Ensembl 12.6 -182.7 -182654 2.4 CTCF REST RAD21 TRIM22 SMC3 RAD51 MID1IP1-AS1 MID1IP1 HSALNG0137345 piR-47162-185 lnc-MID1IP1-2
GH0XJ038983 Enhancer 0.4 Ensembl 12.6 -179.6 -179629 0.8 ZNF512 HDGF HLTF MID1IP1-AS1 MID1IP1 HSALNG0137345 piR-47162-185 lnc-MID1IP1-2
GH0XJ038830 Enhancer 0.2 Ensembl 12.8 -26.7 -26729 0.6 MID1IP1 MID1IP1-AS1 lnc-MID1IP1-4 lnc-MID1IP1-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MID1IP1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for MID1IP1-AS1 Gene

Genomic Locations for MID1IP1-AS1 Gene
chrX:38,779,293-38,803,972
(GRCh38/hg38)
Size:
24,680 bases
Orientation:
Minus strand
chrX:38,660,821-38,663,136
(GRCh37/hg19)
Size:
2,316 bases
Orientation:
Minus strand

Genomic View for MID1IP1-AS1 Gene

Genes around MID1IP1-AS1 on UCSC Golden Path with GeneCards custom track
MID1IP1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MID1IP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MID1IP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MID1IP1-AS1 Gene

Proteins for MID1IP1-AS1 Gene

Post-translational modifications for MID1IP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MID1IP1-AS1 Gene

Domains & Families for MID1IP1-AS1 Gene

Gene Families for MID1IP1-AS1 Gene

genes like me logo Genes that share domains with MID1IP1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MID1IP1-AS1 Gene

Function for MID1IP1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MID1IP1-AS1 Gene

Localization for MID1IP1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MID1IP1-AS1 Gene

Pathways & Interactions for MID1IP1-AS1 Gene

PathCards logo

SuperPathways for MID1IP1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MID1IP1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MID1IP1-AS1 Gene

Drugs & Compounds for MID1IP1-AS1 Gene

No Compound Related Data Available

Transcripts for MID1IP1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MID1IP1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075EA79_9606 lncRNA 696 3

HGNC: 40932,

RefSeq: NR_046706,

LNCipedia: MID1IP1-AS1:2,

URS00003FF287_9606 lncRNA 376 3

Ensembl: ENST00000436893 (view in UCSC) ,

LNCipedia: MID1IP1-AS1:1,

NONCODE: NONHSAT136657.2,

URS0000D5A9C4_9606 lncRNA 8792 2

LncBook: HSALNT0281515,

LNCipedia: MID1IP1-AS1:7,

URS0000D5B084_9606 lncRNA 6852 2

LncBook: HSALNT0281516,

LNCipedia: MID1IP1-AS1:8,

URS0000D59FCB_9606 lncRNA 692 2

LncBook: HSALNT0281517,

LNCipedia: MID1IP1-AS1:3,

MID1IP1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MID1IP1-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for MID1IP1-AS1 Gene

No ASD Table

Relevant External Links for MID1IP1-AS1 Gene

GeneLoc Exon Structure for
MID1IP1-AS1

Expression for MID1IP1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MID1IP1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for MID1IP1-AS1 Gene

This gene is overexpressed in Pancreas (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MID1IP1-AS1

genes like me logo Genes that share expression patterns with MID1IP1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MID1IP1-AS1 Gene

Orthologs for MID1IP1-AS1 Gene

Evolution for MID1IP1-AS1 Gene

ENSEMBL:
Gene Tree for MID1IP1-AS1 (if available)
TreeFam:
Gene Tree for MID1IP1-AS1 (if available)

No data available for Orthologs for MID1IP1-AS1 Gene

Paralogs for MID1IP1-AS1 Gene

No data available for Paralogs for MID1IP1-AS1 Gene

Variants for MID1IP1-AS1 Gene

Additional dbSNP identifiers (rs#s) for MID1IP1-AS1 Gene

Additional Variant Information for MID1IP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MID1IP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MID1IP1-AS1 Gene

Disorders for MID1IP1-AS1 Gene

No disorders were found for MID1IP1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MID1IP1-AS1 Gene

Publications for MID1IP1-AS1 Gene

No publications were found for MID1IP1-AS1 Gene.

Products for MID1IP1-AS1 Gene

Sources for MID1IP1-AS1 Gene