Aliases for MICB Gene
Aliases for MICB Gene
External Ids for MICB Gene
- HGNC: 7091
- Entrez Gene: 4277
- Ensembl: ENSG00000204516
- OMIM: 602436
- UniProtKB: Q29980
Previous GeneCards Identifiers for MICB Gene
- GC06P031519
- GC06P031421
- GC06P031233
- GC06P031570
- GC06P031574
- GC06P031576
- GC06P031465
- GC06P031252
- GC06P031500
Summaries for MICB Gene
-
This gene encodes a heavily glycosylated protein which is a ligand for the NKG2D type II receptor. Binding of the ligand activates the cytolytic response of natural killer (NK) cells, CD8 alphabeta T cells, and gammadelta T cells which express the receptor. This protein is stress-induced and is similar to MHC class I molecules; however, it does not associate with beta-2-microglobulin or bind peptides. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]
GeneCards Summary for MICB Gene
MICB (MHC Class I Polypeptide-Related Sequence B) is a Protein Coding gene. Diseases associated with MICB include Dengue Shock Syndrome and Asymptomatic Dengue. Among its related pathways are Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell and Innate Immune System. Gene Ontology (GO) annotations related to this gene include antigen binding and natural killer cell lectin-like receptor binding. An important paralog of this gene is MICA.
UniProtKB/Swiss-Prot for MICB Gene
-
Seems to have no role in antigen presentation. Acts as a stress-induced self-antigen that is recognized by gamma delta T cells. Ligand for the KLRK1/NKG2D receptor. Binding to KLRK1 leads to cell lysis.
Additional gene information for MICB Gene
- Monarch Initiative
- Search for MICB at DataMed
- Search for MICB at HumanCyc
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MICB Gene
Genomics for MICB Gene
GeneHancer (GH) Regulatory Elements for MICB Gene
Promoters and enhancers for MICB Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around MICB on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the MICB gene promoter:
-
- Sp1
- POU2F1
- POU2F1a
Regulatory Element Products
Genomic Locations for MICB Gene
Genomic Locations for MICB Gene
- chr6:31,494,277-31,511,124
- (GRCh38/hg38)
- Size:
- 16,848 bases
- Orientation:
- Plus strand
- chr6:31,462,658-31,478,901
- (GRCh37/hg19)
- Size:
- 16,244 bases
- Orientation:
- Plus strand
Genomic View for MICB Gene
Genes around MICB on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6p21.33 by Entrez Gene
- 6p21.33 by HGNC
- 6p21.33 by Ensembl
MICB Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for MICB Gene
Proteins for MICB Gene
-
Protein details for MICB Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q29980-MICB_HUMAN
- Recommended name:
- MHC class I polypeptide-related sequence B
- Protein Accession:
- Q29980
- A2AC57
- A6NP85
- B0UZ10
- B2RAK2
- O14499
- O14500
- O19798
- O19799
- O19800
- O19801
- O19802
- O19803
- O78099
- O78100
- O78101
- O78102
- O78103
- O78104
- P79525
- P79541
- Q5GR31
- Q5GR37
- Q5GR41
- Q5GR42
- Q5GR43
- Q5GR44
- Q5GR46
- Q5GR48
- Q5RIY6
- Q5SSK1
- Q5ST25
- Q7JK51
- Q7YQ89
- Q861E6
- Q9MY18
- Q9MY19
- Q9MY20
- Q9UBH4
- Q9UBZ8
- Q9UEJ0
Protein attributes for MICB Gene
- Size:
- 383 amino acids
- Molecular mass:
- 42646 Da
- Quaternary structure:
-
- Unlike classical MHC class I molecules, does not form a heterodimer with beta-2-microglobulin. Binds as a monomer to a KLRK1/NKG2D homodimer. KLRK1 forms a complex with HCST/DAP10 in which KLRK1 binds MICB while HCST acts as an adapter molecule which enables signal transduction. Receptor-ligand interaction induces clustering of both proteins in ordered structures called immune synapses and also leads to their intercellular transfer. This is associated with a reduction in the cytotoxicity of KLRK1-expressing cells. Binds to human cytomegalovirus glycoprotein UL16 which causes sequestration of MICB in the endoplasmic reticulum and increases resistance to KLRK1-mediated cytotoxicity.
Protein Expression for MICB Gene
Post-translational modifications for MICB Gene
- Proteolytically cleaved and released from the cell surface of tumor cells.
- Ubiquitination at posLast=196196
- Glycosylation at posLast=261261, isoforms=2220, isoforms=2210, and isoforms=2164
- Modification sites at PhosphoSitePlus
Other Protein References for MICB Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- R&D Systems Antibodies for MICB (MICB)
-
Custom Antibody ServicesOriGene Antibodies for MICB
- Novus Biologicals Antibodies for MICB
-
Abcam antibodies for MICB
- Invitrogen Antibodies for MICB (AFLGC-MICB)
- GeneTex MICB Antibody for MICB
-
Boster Bio Antibodies for MICB
-
Santa Cruz Biotechnology (SCBT) Antibodies for MICB
- Sino Biological Antibodies for MICB
Protein Products
- R&D Systems Proteins and Enzymes for MICB
-
OriGene Purified Proteins for MICB
- Search Origene for MassSpec and Protein Over-expression Lysates for MICB
- Origene Custom Protein Services for MICB
- Sino Biological Recombinant Proteins for MICB
- Sino Biological Cell Lysates for MICB
- ProSpec Recombinant Proteins for MICB
- antibodies-online: Search results for 10 available MICB Proteins ranked by validation data
- Compare Top MICB Proteins
-
Quality Products:
- Search GeneTex for Proteins for MICB
-
Abcam proteins for MICB
Assay Products
-
Custom Assay ServicesOriGene ELISA Kits for MICB
- R&D Systems ELISAs, Luminex Assays, and other biochemical assays for MICB (MICB)
- Novus Biologicals ELISA Kits for MICB
-
Boster Bio ELISA Kits for MICB
- Sino Biological Assays for MICB
No data available for DME Specific Peptides for MICB Gene
Domains & Families for MICB Gene
Gene Families for MICB Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Disease related genes
- Predicted membrane proteins
Protein Domains for MICB Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for MICB Gene
- GenScript: Design optimal peptide antigens:
-
- MHC class I polypeptide-related sequence B (B0S8B5_HUMAN)
- MHC class I polypeptide-related sequence B (B0S8B6_HUMAN)
- cDNA, FLJ94967, Homo sapiens MHC class I polypeptide-related sequence B (MICB),mRNA (B2RAK2_HUMAN)
- MHC class I chain-related molecule B (D2KNA0_HUMAN)
- MHC class I chain-related protein B (E0AG58_HUMAN)
Graphical View of Domain Structure for InterPro Entry
Q29980- Family:
-
- Belongs to the MHC class I family. MIC subfamily.
Function for MICB Gene
Molecular function for MICB Gene
- UniProtKB/Swiss-Prot Function:
- Seems to have no role in antigen presentation. Acts as a stress-induced self-antigen that is recognized by gamma delta T cells. Ligand for the KLRK1/NKG2D receptor. Binding to KLRK1 leads to cell lysis.
- UniProtKB/Swiss-Prot Induction:
- By heat shock, oxidative stress, retinoic acid, IFN-alpha and the DNA methyltransferase inhibitor 5-aza-2-deoxycytidine. Induction by IFN-alpha is impaired in patients with chronic hepatitis C virus infection. Down-regulated by human cytomegalovirus UL112 microRNA during viral infection which leads to decreased binding of KLRK1/NKG2D and reduced killing by natural killer cells.
- GENATLAS Biochemistry:
- MHC class I,chain-related gene B,preferentially expressed in fibroblast and epithelial cell
Phenotypes From GWAS Catalog for MICB Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0046703 | natural killer cell lectin-like receptor binding | IDA | 11491531 |
Phenotypes for MICB Gene
- GenomeRNAi human phenotypes for MICB:
-
- Increased transcriptional activity
- Increased number of mitotic cells
- Increased G1 DNA content
- Decreased HIV-LTR-beta-galactosidase protein expression
- Decreased Tat-dependent HIV-LTR-beta-galactosidase protein expression
- Increased virus production
- Decreased viability
- no effect
- Increased vaccinia virus (VACV) infection
- Decreased viability with paclitaxel
- Mildly decreased CFP-tsO45G cell surface transport
- Increased Sindbis virus (SINV) infection
- Synthetic lethal with vaccinia virus (VACV) infection
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for MICB
-
CRISPR Products
-
OriGene CRISPR knockouts for MICB
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for MICB
- genomics-online: gRNA clones - Search results for 67 available MICB gene related products
- Overview of 67 available MICB gene related products
- Applied Biological Materials CRISPR for MICB
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for MICB
- GenScript: Design CRISPR guide RNA sequences for MICB
miRNA for MICB Gene
- miRTarBase miRNAs that target MICB
-
- hsa-mir-17-5p (MIRT100276)
- hsa-mir-20a-5p (MIRT100277)
- hsa-mir-93-5p (MIRT100278)
- hsa-mir-106b-5p (MIRT100281)
- hsa-mir-20b-5p (MIRT100288)
- hsa-mir-519d-3p (MIRT100297)
- hsa-let-7c-5p (MIRT439155)
- hsa-mir-3692-3p (MIRT683779)
- hsa-mir-3977 (MIRT683780)
- hsa-mir-3192-3p (MIRT683781)
- hsa-mir-6848-5p (MIRT683782)
- hsa-mir-6846-5p (MIRT683783)
- hsa-mir-6815-3p (MIRT683784)
- hsa-mir-760 (MIRT683785)
- hsa-mir-103a-2-5p (MIRT683786)
- hsa-mir-3151-3p (MIRT683787)
- hsa-mir-6798-5p (MIRT683788)
- hsa-mir-141-5p (MIRT683789)
- hsa-mir-6805-5p (MIRT683790)
- hsa-mir-5088-5p (MIRT683791)
- hsa-mir-6886-3p (MIRT691418)
- hsa-mir-140-3p (MIRT691419)
- hsa-mir-129-2-3p (MIRT691420)
- hsa-mir-129-1-3p (MIRT691421)
- hsa-mir-6856-3p (MIRT691422)
- hsa-mir-1273h-5p (MIRT736874)
- hsa-mir-149-3p (MIRT737749)
- hsa-mir-1827 (MIRT738120)
- hsa-mir-1910-3p (MIRT738415)
- hsa-mir-2467-3p (MIRT739275)
- hsa-mir-30b-3p (MIRT739764)
- hsa-mir-3160-3p (MIRT740521)
- hsa-mir-3192-5p (MIRT741020)
- hsa-mir-3612 (MIRT741579)
- hsa-mir-3689a-3p (MIRT742266)
- hsa-mir-3689b-3p (MIRT742336)
- hsa-mir-3689c (MIRT742406)
- hsa-mir-377-5p (MIRT742692)
- hsa-mir-4257 (MIRT743415)
- hsa-mir-4487 (MIRT745208)
- hsa-mir-455-3p (MIRT746188)
- hsa-mir-4728-5p (MIRT747845)
- hsa-mir-490-3p (MIRT749171)
- hsa-mir-558 (MIRT751048)
- hsa-mir-6086 (MIRT751846)
- hsa-mir-6499-3p (MIRT752806)
- hsa-mir-650 (MIRT753027)
- hsa-mir-6511a-5p (MIRT753140)
- hsa-mir-6516-5p (MIRT753348)
- hsa-mir-6779-5p (MIRT755505)
- hsa-mir-6780a-5p (MIRT755581)
- hsa-mir-6785-5p (MIRT755840)
- hsa-mir-6799-5p (MIRT756311)
- hsa-mir-6883-5p (MIRT758425)
- hsa-mir-7106-5p (MIRT758866)
- hsa-mir-7851-3p (MIRT759889)
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for MICB
- Browse OriGene Inhibitory RNA Products For MICB
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for MICB
- genomics-online: shRNA clones - Search results for 67 available MICB gene related products
- Overview of 67 available MICB gene related products
Clone Products
- Sino Biological Human cDNA Clone for MICB
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for MICB
- Applied Biological Materials Clones for MICB
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
- R&D Systems cDNA Clones for MICB
Cell Line Products
-
Horizon Cell Lines for MICB
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for MICB Gene
Localization for MICB Gene
Subcellular locations from UniProtKB/Swiss-Prot for MICB Gene
- Cell membrane; Single-pass type I membrane protein. Note=Binding to human cytomegalovirus glycoprotein UL16 causes sequestration in the endoplasmic reticulum. {ECO:0000250 UniProtKB:Q29983, ECO:0000269 PubMed:12782710}.
| Compartment | Confidence |
|---|---|
| plasma membrane | 4 |
| extracellular | 2 |
| nucleus | 1 |
- Golgi apparatus (2)
- Vesicles (2)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005886 | plasma membrane | TAS,IBA | -- |
| GO:0009986 | cell surface | ISS | -- |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
Pathways & Interactions for MICB Gene
Pathways by source for MICB Gene
3 Reactome pathways for MICB Gene
2 KEGG pathways for MICB Gene
Interacting Proteins for MICB Gene
GPS-Prot Interaction Network for MICB
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0001913 | T cell mediated cytotoxicity | IBA | -- |
| GO:0002250 | adaptive immune response | IEA | -- |
| GO:0002376 | immune system process | IEA | -- |
| GO:0002429 | immune response-activating cell surface receptor signaling pathway | IDA | 11491531 |
| GO:0006979 | response to oxidative stress | IDA | 11287116 |
No data available for SIGNOR curated interactions for MICB Gene
Transcripts for MICB Gene
mRNA/cDNA for MICB Gene
- (3) REFSEQ mRNAs :
- (20) Additional mRNA sequences :
- (43) Selected AceView cDNA sequences:
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000399150 2346 bps (uc003nto.6)
- ENST00000252229 2446 bps (uc003ntn.6)
- ENST00000494577 907 bps (uc063nar.1)
- ENST00000538442 2411 bps (uc011dnm.3)
Unigene Clusters for MICB Gene
- MHC class I polypeptide-related sequence B:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for MICB
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for MICB
- genomics-online: gRNA clones - Search results for 67 available MICB gene related products
- Overview of 67 available MICB gene related products
- Applied Biological Materials CRISPR for MICB
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for MICB
- GenScript: Design CRISPR guide RNA sequences for MICB
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for MICB
- Browse OriGene Inhibitory RNA Products For MICB
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for MICB
- genomics-online: shRNA clones - Search results for 67 available MICB gene related products
- Overview of 67 available MICB gene related products
Clone Products
- Sino Biological Human cDNA Clone for MICB
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for MICB
- Applied Biological Materials Clones for MICB
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
- R&D Systems cDNA Clones for MICB
Expression for MICB Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Inner Cell Mass (Early Embryonic Tissues)
- Mesenchymal Stem Cells (Uncategorized)
- Umbilical Cord (Extraembryonic Tissues)
- Neural Tube (Nervous System)
mRNA differential expression in normal tissues according to GTEx for MICB Gene
This gene is overexpressed in Whole Blood (x8.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for MICB Gene
NURSA nuclear receptor signaling pathways regulating expression of MICB Gene:
MICBSOURCE GeneReport for Unigene cluster for MICB Gene:
Hs.731446mRNA Expression by UniProt/SwissProt for MICB Gene:
Q29980-MICB_HUMAN
Tissue specificity:
Widely expressed with the exception of the central nervous system where it is absent. Expressed in many, but not all, epithelial tumors of lung, breast, kidney, ovary, prostate and colon. In hepatocellular carcinomas, expressed in tumor cells but not in surrounding non-cancerous tissue.
Evidence on tissue expression from TISSUES for MICB Gene
- Pancreas(4.6)
- Nervous system(4)
- Lung(3.4)
- Blood(2.9)
- Eye(2.5)
- Intestine(2.4)
- Skin(2.4)
- Kidney(2.2)
Primer Products
-
OriGene qPCR primer pairs for MICB
- genomics-online: primer clones - Search results for 67 available MICB gene related products
- Overview of 67 available MICB gene related products
Gene Expression Assay Products
No data available for Protein differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for MICB Gene
Orthologs for MICB Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | MICB 34 33 |
|
OneToMany | |
| cow (Bos Taurus) |
Mammalia | MIC1 33 |
|
||
| -- 34 |
|
OneToMany | |||
| mouse (Mus musculus) |
Mammalia | Mill2 16 34 33 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Micb 33 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 34 |
|
ManyToMany | |
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| -- 34 |
|
ManyToMany | |||
| oppossum (Monodelphis domestica) |
Mammalia | MILL-LIKE 34 |
|
OneToMany | |
| chicken (Gallus gallus) |
Aves | -- 34 |
|
OneToMany | |
| lizard (Anolis carolinensis) |
Reptilia | -- 34 |
|
OneToMany | |
| zebrafish (Danio rerio) |
Actinopterygii | si:ch211-147g22.4 34 |
|
ManyToMany | |
| mhc1uca 34 |
|
ManyToMany | |||
| mhc1uba 34 |
|
ManyToMany | |||
| mhc1zca 34 |
|
ManyToMany | |||
| si:dkey-52p2.7 34 |
|
ManyToMany | |||
| BX572619.3 34 |
|
ManyToMany | |||
| mhc1zea 34 |
|
ManyToMany | |||
| mhc1zfa 34 |
|
ManyToMany | |||
| si:ch211-147g22.3 34 |
|
ManyToMany | |||
| BX682558.1 34 |
|
ManyToMany | |||
| si:ch211-147g22.1 34 |
|
ManyToMany | |||
| BX572619.1 34 |
|
ManyToMany | |||
| BX572619.2 34 |
|
ManyToMany | |||
| CR339041.1 34 |
|
ManyToMany | |||
| si:ch211-147g22.2 34 |
|
ManyToMany | |||
| si:dkey-52p2.6 34 |
|
ManyToMany | |||
| DARE-ZE*0601 34 |
|
ManyToMany | |||
| arpc1a 34 |
|
ManyToMany | |||
| CABZ01031753.1 34 |
|
ManyToMany | |||
| CABZ01031754.1 34 |
|
ManyToMany | |||
| CU571323.1 34 |
|
ManyToMany | |||
| CR339041.2 34 |
|
ManyToMany | |||
| mhc1zaa 34 34 |
|
ManyToMany | |||
| mhc1zba 34 |
|
ManyToMany | |||
| si:dkey-52p2.4 34 |
|
ManyToMany | |||
| zgc:113060 34 |
|
ManyToMany |
- Species where no ortholog for MICB was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- dog (Canis familiaris)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Evolution for MICB Gene
- ENSEMBL:
- Gene Tree for MICB (if available)
- TreeFam:
- Gene Tree for MICB (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for MICB: view image
Paralogs for MICB Gene
(62) SIMAP similar genes for MICB Gene using alignment to 8 proteins:
- MICB_HUMAN
- A2AC57_HUMAN
- D2KNA0_HUMAN
- E0AG58_HUMAN
- F5H7Q8_HUMAN
- G1EFQ4_HUMAN
- H9B8I7_HUMAN
- Q0EFB4_HUMAN
- MICA
- HLA-MICA
- DKFZp762B162
- PERB11.1
- HLA-A*0201V3
- HFE
- Cw
- HLA-DQB1
- HLA-A*33
- MHC class I HLA-A
- HLA-H
- HLA-Cw*
- HLA-A24AK
- HLA-A*31
- HLA-A*0226
- HLA-A*02
- B*56
- HLA-Cw*15P
- HLA-DMB
- HLA-Cw3
- HLA
- HLA-A
- HLA-E
- HLA-G
- HLA-B35
- HLA-B*3512
- HLA-A*01
- DKFZp686N10220
- Cw*08
- HLA-F
- HLA-B*
- HLA-B41
- HLA-B*27
- HLA-Cw
- HLA-C
- MHC
- HLAC
- HLA-Bw62.5
- HLA-Bw62.4
- HLA-Bw62.3
- HLA-Bw62.1
- HLA-B57
- B-3501
- B-1510
- HLA-B*1513
- EA2.1
- HLA-B
- HLA-A*03
- HLA-B*35JAC
- B*35
- B*15
- HLA-B18
- HLA B
- HLA-Cw*02023
- HLA-B*3531
- EA1.2
- DKFZp686P19218
- HLA-CW
- HLA-Cw*03MAC
- HLA-B15
- HLA-B*58
- HLA-B*1522
Pseudogenes.org Pseudogenes for MICB Gene
Variants for MICB Gene
Polymorphic Variants from UniProtKB/Swiss-Prot for MICB Gene
- MICB_HUMAN-Q29980
- The following alleles of MICB are known: MICB*001, MICB*002, MICB*003, MICB*004, MICB*005, MICB*006, MICB*007, MICB*008, MICB*009N, MICB*010, MICB*011, MICB*012, MICB*013, MICB*014, MICB*015, MICB*016, MICB*018, MICB*019, MICB*020, MICB*021N and MICB*022. MICB*009N and MICB*021N are null alleles which are not expressed. The sequence shown is that of MICB*001.
| SNP ID | Clin | Chr 06 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000282069 | -- | 31,499,917(+) | T/C | intron_variant | |
| rs1000436148 | -- | 31,493,917(+) | G/T | upstream_transcript_variant | |
| rs1000630874 | -- | 31,498,405(+) | G/ | intron_variant | |
| rs1000997582 | -- | 31,510,246(+) | G/A | 3_prime_UTR_variant | |
| rs1001040824 | -- | 31,511,356(+) | G/A | downstream_transcript_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv10403n54 | CNV | loss | 21841781 |
| dgv10404n54 | CNV | loss | 21841781 |
| dgv10460n54 | CNV | gain | 21841781 |
| dgv213e55 | CNV | gain | 17911159 |
| dgv215e55 | CNV | loss | 17911159 |
| dgv5942n100 | CNV | loss | 25217958 |
| dgv5943n100 | CNV | gain+loss | 25217958 |
| dgv5944n100 | CNV | loss | 25217958 |
| dgv995e201 | CNV | deletion | 23290073 |
| esv2731822 | CNV | deletion | 23290073 |
| esv2759414 | CNV | gain+loss | 17122850 |
| esv3890821 | CNV | gain | 25118596 |
| nsv1015886 | CNV | loss | 25217958 |
| nsv1018960 | CNV | gain | 25217958 |
| nsv1021578 | CNV | gain | 25217958 |
| nsv1022499 | CNV | gain | 25217958 |
| nsv1025961 | CNV | loss | 25217958 |
| nsv1073969 | CNV | deletion | 25765185 |
| nsv10821 | CNV | loss | 18304495 |
| nsv1112900 | CNV | deletion | 24896259 |
| nsv1126749 | CNV | deletion | 24896259 |
| nsv462869 | CNV | loss | 19166990 |
| nsv517441 | CNV | gain+loss | 19592680 |
| nsv601940 | CNV | loss | 21841781 |
Residual Variation Intolerance Score:
71.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
5.90;
74.29% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for MICB Gene
SNP Genotyping and Copy Number Assay Products
Disorders for MICB Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| dengue shock syndrome |
|
|
| asymptomatic dengue |
|
|
| behcet syndrome |
|
|
| rheumatoid arthritis |
|
|
| schizophrenia |
|
|
Search MICB in MalaCards
View complete list of genes associated with diseases
UniProtKB/Swiss-Prot
MICB_HUMAN- Rheumatoid arthritis (RA) [MIM:180300]: An inflammatory disease with autoimmune features and a complex genetic component. It primarily affects the joints and is characterized by inflammatory changes in the synovial membranes and articular structures, widespread fibrinoid degeneration of the collagen fibers in mesenchymal tissues, and by atrophy and rarefaction of bony structures. {ECO:0000269 PubMed:17003176}. Note=Disease susceptibility is associated with variations affecting the gene represented in this entry. The MICB*004 allele is associated with rheumatoid arthritis.
- Note=Genetic variation in MICB is associated with cytomegalovirus and herpes simplex virus I seropositivity and this may be associated with schizophrenia risk.
Additional Disease Information for MICB
- Genetic Association Database
- (GAD)
- Human Genome Epidemiology Navigator
- (HuGE)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No data available for Genatlas for MICB Gene
Publications for MICB Gene
- MHC class I chain-related gene B (MICB) is associated with rheumatoid arthritis susceptibility. (PMID: 17003176) López-Arbesu R … González S (Rheumatology (Oxford, England) 2007) 3 4 22 44 58
- MICB0106 gene polymorphism is associated with ulcerative colitis in central China. (PMID: 19662431) Li Y … Zhang X (International journal of colorectal disease 2010) 3 22 44 58
- Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02). (PMID: 19115949) Limou S … ANRS Genomic Group (The Journal of infectious diseases 2009) 3 22 44 58
- Sequencing-based genotyping and association analysis of the MICA and MICB genes in type 1 diabetes. (PMID: 18332098) Field SF … Todd JA (Diabetes 2008) 3 22 44 58
- Genetic influence of the nonclassical major histocompatibility complex class I molecule MICB in multiple sclerosis susceptibility. (PMID: 18588574) Fernandez-Morera JL … Lopez-Larrea C (Tissue antigens 2008) 3 22 44 58
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Sources for MICB Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
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- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34)