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Aliases for MICA-AS1 Gene

Subcategory (RNA class) for MICA-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for MICA-AS1 Gene

  • MICA Antisense RNA 1 2 3
  • AL645933.2 5

External Ids for MICA-AS1 Gene

Previous GeneCards Identifiers for MICA-AS1 Gene

  • GC06M031401
  • GC06M031406

Summaries for MICA-AS1 Gene

GeneCards Summary for MICA-AS1 Gene

MICA-AS1 (MICA Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for MICA-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MICA-AS1 Gene

Genomics for MICA-AS1 Gene

GeneHancer (GH) Regulatory Elements for MICA-AS1 Gene

Promoters and enhancers for MICA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J031396 Enhancer 1.3 Ensembl ENCODE dbSUPER 727.9 +1.5 1483 0.8 HDAC1 ELF3 ATF1 ARNT ARID4B ZNF48 RAD21 RFX5 ZNF614 ZNF143 MICA-AS1 MICB MICA ENSG00000271581 PSORS1C2 GC06P032271
GH06J031398 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 78.5 -3.4 -3427 5.8 MLX ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC MEF2D MICA ENSG00000199332 GC06M031411 HCP5 MICA-AS1 DDX39B DHX16 SKIV2L MICB ATF6B
GH06J031395 Enhancer 1 ENCODE dbSUPER 72.2 +2.5 2483 0.1 HDAC1 PKNOX1 TCF12 SIRT6 ATF7 ZBTB2 NCOA1 ZEB2 MEF2D NFIC MICA-AS1 ATF6B ENSG00000272540 GC06P032271
GH06J031366 Enhancer 1.4 FANTOM5 Ensembl ENCODE 48.2 +31.4 31430 0.9 HDGF PKNOX1 ATF1 ARID4B SIN3A GLI4 ZNF2 ZNF48 YY1 SLC30A9 DHFRP2 MICA-AS1 HLA-C MICB ATP6V1G2 PSORS1C2 POU5F1 NFKBIL1 VWA7 GC06P031563
GH06J031538 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 29.2 -142.7 -142654 4.9 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 DDX39B DDX39B-AS1 GC06M031542 GC06M031543 GC06M031550 GC06M031555 GC06M031573 GC06M032007 GC06M032013 GC06M032015
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MICA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MICA-AS1 Gene

Genomic Locations for MICA-AS1 Gene
chr6:31,394,289-31,398,485
(GRCh38/hg38)
Size:
4,197 bases
Orientation:
Minus strand
chr6:31,362,066-31,363,272
(GRCh37/hg19)
Size:
1,207 bases
Orientation:
Minus strand

Genomic View for MICA-AS1 Gene

Genes around MICA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MICA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MICA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MICA-AS1 Gene

Function for MICA-AS1 Gene

Phenotypes From GWAS Catalog for MICA-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MICA-AS1 Gene

Localization for MICA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MICA-AS1 Gene

Pathways & Interactions for MICA-AS1 Gene

SuperPathways for MICA-AS1 Gene

No Data Available

Interacting Proteins for MICA-AS1 Gene

Gene Ontology (GO) - Biological Process for MICA-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MICA-AS1 Gene

Drugs & Compounds for MICA-AS1 Gene

No Compound Related Data Available

Transcripts for MICA-AS1 Gene

mRNA/cDNA for MICA-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MICA-AS1 Gene

No ASD Table

Relevant External Links for MICA-AS1 Gene

GeneLoc Exon Structure for
MICA-AS1
ECgene alternative splicing isoforms for
MICA-AS1

Expression for MICA-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MICA-AS1 Gene

Orthologs for MICA-AS1 Gene

Evolution for MICA-AS1 Gene

ENSEMBL:
Gene Tree for MICA-AS1 (if available)
TreeFam:
Gene Tree for MICA-AS1 (if available)

No data available for Orthologs for MICA-AS1 Gene

Paralogs for MICA-AS1 Gene

No data available for Paralogs for MICA-AS1 Gene

Variants for MICA-AS1 Gene

Sequence variations from dbSNP and Humsavar for MICA-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000359507 -- 31,399,954(-) A/G upstream_transcript_variant
rs1000911754 -- 31,398,009(-) C/G intron_variant
rs1000983545 -- 31,397,541(-) CTCT/CT intron_variant
rs1001639582 -- 31,398,435(-) G/A non_coding_transcript_variant
rs1002089020 -- 31,397,378(-) C/T intron_variant

Additional Variant Information for MICA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MICA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MICA-AS1 Gene

Disorders for MICA-AS1 Gene

Additional Disease Information for MICA-AS1

No disorders were found for MICA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MICA-AS1 Gene

Publications for MICA-AS1 Gene

  1. Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin. (PMID: 23417110) Tin A … Kao WH (Human genetics 2013) 3 58
  2. Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma. (PMID: 21499248) Kumar V … Matsuda K (Nature genetics 2011) 3 58
  3. Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility. (PMID: 21743469) Evans DM … Wellcome Trust Case Control Consortium 2 (WTCCC2) (Nature genetics 2011) 3 58
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for MICA-AS1 Gene

Sources for MICA-AS1 Gene

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