Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIAT Gene

Subcategory (RNA class) for MIAT Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for MIAT Gene

  • Myocardial Infarction Associated Transcript (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 66 2 3
  • Chromosome 22 Open Reading Frame 35 2
  • Non-Protein Coding RNA 66 2
  • MI Related Novel MRNA 3
  • LncRNA-MIAT 3
  • NCRNA00066 3
  • LINC00066 3
  • C22orf35 3
  • GOMAFU 3
  • RNCR2 3

External Ids for MIAT Gene

Previous HGNC Symbols for MIAT Gene

  • C22orf35

Previous GeneCards Identifiers for MIAT Gene

  • GC22P025372
  • GC22P027042
  • GC22P010000

Summaries for MIAT Gene

Entrez Gene Summary for MIAT Gene

  • This gene encodes a spliced long non-coding RNA that may constitute a component of the nuclear matrix. Altered expression of this locus has been reported to be associated with a susceptibility to myocardial infarction. It has also been proposed that pathways involving this transcript may contribute to the pathophysiology of schizophrenia. A similar gene in mouse has been associated with retinal cell fate determination. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Dec 2014]

GeneCards Summary for MIAT Gene

MIAT (Myocardial Infarction Associated Transcript (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with MIAT include Myocardial Infarction and Paranoid Schizophrenia.

Gene Wiki entry for MIAT Gene

Additional gene information for MIAT Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIAT Gene

Genomics for MIAT Gene

GeneHancer (GH) Regulatory Elements for MIAT Gene

Promoters and enhancers for MIAT Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I026668 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 18 +26.2 26156 7.3 HDGF PKNOX1 SMAD1 SIN3A YY1 E2F8 ZNF143 KLF13 SP3 JUNB ENSG00000206028 ENSG00000275942 ENSG00000277941 MIATNB ENSG00000276991 MIAT TFIP11 HPS4 SRRD CRYBB1
GH22I026657 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 14.3 +11.9 11896 2.6 PKNOX1 CLOCK SMAD1 SIN3A ZNF143 FOS KLF13 SP3 ZNF592 SMARCA4 ENSG00000278404 MIAT CRYBB1 CRYBA4 HPS4 SRRD TFIP11 TPST2 ENSG00000206028 SEZ6L
GH22I026664 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.4 +19.3 19267 1.7 CTCF SMAD1 EBF1 RAD21 RELA CTBP1 ZNF366 SMC3 ZNF143 IKZF2 MIAT TPST2 HMGB1P10 MIR548J TFIP11 CRYBB1 CRYBA4 HPS4 SRRD ENSG00000206028
GH22I026679 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.3 +32.8 32773 0.4 CTCF RAD21 RELA POLR2A ZNF366 SCRT2 SMC3 ZNF143 RCOR1 CHD2 MIAT ENSG00000276991 MIATNB GC22P026792
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIAT on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MIAT gene promoter:

Genomic Locations for MIAT Gene

Genomic Locations for MIAT Gene
30,051 bases
Plus strand

Genomic View for MIAT Gene

Genes around MIAT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIAT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIAT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIAT Gene

Proteins for MIAT Gene

Post-translational modifications for MIAT Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIAT Gene

Domains & Families for MIAT Gene

Gene Families for MIAT Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIAT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIAT Gene

Function for MIAT Gene

Phenotypes From GWAS Catalog for MIAT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIAT Gene

Localization for MIAT Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for MIAT gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIAT Gene

Pathways & Interactions for MIAT Gene

No Data Available

Interacting Proteins for MIAT Gene

Gene Ontology (GO) - Biological Process for MIAT Gene


No data available for Pathways by source and SIGNOR curated interactions for MIAT Gene

Drugs & Compounds for MIAT Gene

No Compound Related Data Available

Transcripts for MIAT Gene

Unigene Clusters for MIAT Gene

Myocardial infarction associated transcript (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MIAT Gene

No ASD Table

Relevant External Links for MIAT Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIAT Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIAT Gene

mRNA differential expression in normal tissues according to GTEx for MIAT Gene

This gene is overexpressed in Pituitary (x10.0), Brain - Frontal Cortex (BA9) (x6.6), Brain - Cortex (x6.0), Brain - Anterior cingulate cortex (BA24) (x4.4), and Whole Blood (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of MIAT Gene:


SOURCE GeneReport for Unigene cluster for MIAT Gene:

genes like me logo Genes that share expression patterns with MIAT: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIAT Gene

Orthologs for MIAT Gene

Evolution for MIAT Gene

Gene Tree for MIAT (if available)
Gene Tree for MIAT (if available)

No data available for Orthologs for MIAT Gene

Paralogs for MIAT Gene

No data available for Paralogs for MIAT Gene

Variants for MIAT Gene

Sequence variations from dbSNP and Humsavar for MIAT Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000012610 -- 26,676,215(+) TTCCATTCCAT/TTCCAT non_coding_transcript_variant
rs1000068732 -- 26,676,023(+) T/C non_coding_transcript_variant
rs1000402874 -- 26,671,258(+) T/C non_coding_transcript_variant
rs1000430989 -- 26,670,929(+) A/G non_coding_transcript_variant
rs1000482921 -- 26,670,664(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIAT Gene

Variant ID Type Subtype PubMed ID
dgv1311e212 CNV loss 25503493
esv3568337 CNV loss 25503493
nsv7350 OTHER inversion 18451855

Additional Variant Information for MIAT Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIAT Gene

Disorders for MIAT Gene

MalaCards: The human disease database

(3) MalaCards diseases for MIAT Gene - From: HGMD, OMIM, GTR, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
myocardial infarction
  • myocardial infarction, susceptibility to
paranoid schizophrenia
  • chronic paranoid schizophrenia
  • sczd
- elite association - COSMIC cancer census association via MalaCards
Search MIAT in MalaCards View complete list of genes associated with diseases

Additional Disease Information for MIAT

genes like me logo Genes that share disorders with MIAT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIAT Gene

Publications for MIAT Gene

  1. The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing. (PMID: 23628989) Barry G … Mattick JS (Molecular psychiatry 2014) 2 3 58
  2. A long non-coding RNA signature in glioblastoma multiforme predicts survival. (PMID: 23726844) Zhang XQ … Leung GK (Neurobiology of disease 2013) 2 3 58
  3. The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons. (PMID: 17623775) Sone M … Nakagawa S (Journal of cell science 2007) 2 3 58
  4. Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction. (PMID: 17066261) Ishii N … Tanaka T (Journal of human genetics 2006) 2 3 58
  5. Long non-coding RNA MIAT knockdown promotes osteogenic differentiation of human adipose-derived stem cells. (PMID: 27797128) Jin C … Zhou Y (Cell biology international 2017) 3 58

Products for MIAT Gene

Sources for MIAT Gene

Loading form....