Aliases for MGC16275 Gene

Subcategory (RNA class) for MGC16275 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for MGC16275 Gene

  • Uncharacterized Protein MGC16275 3
  • NONHSAG022690.2 91
  • HSALNG0118635 164
  • CTD-2514K5.2 3
  • Lnc-BTBD17-3 165

External Ids for MGC16275 Gene

Previous GeneCards Identifiers for MGC16275 Gene

  • GC17U990262
  • GC17M072206

Summaries for MGC16275 Gene

GeneCards Summary for MGC16275 Gene

MGC16275 (Uncharacterized Protein MGC16275) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MGC16275 include Retinitis Pigmentosa 6 and Retinitis Pigmentosa 3.

Additional gene information for MGC16275 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MGC16275 Gene

Genomics for MGC16275 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MGC16275 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J074209 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.4 407 6.5 GATAD2A CTCF TEAD4 ZNF629 LEF1 ZNF692 POLR2A ZNF174 BACH1 FOXA1 ENSG00000246731 MGC16275 TTYH2 NT5C NUP85 C17orf80 NAT9 FAM104A NONHSAG022689.2 RPL38
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MGC16275 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the MGC16275 gene promoter:
  • AML1a
  • AP-2alpha
  • AP-2alphaA
  • AP-2beta
  • AP-2gamma
  • AP-4
  • FOXD1
  • HNF-4alpha1
  • HNF-4alpha2
  • Pax-4a

Genomic Locations for MGC16275 Gene

Genomic Locations for MGC16275 Gene
chr17:74,209,980-74,213,343
(GRCh38/hg38)
Size:
3,364 bases
Orientation:
Minus strand
chr17:72,206,119-72,209,481
(GRCh37/hg19)
Size:
3,363 bases
Orientation:
Minus strand

Genomic View for MGC16275 Gene

Genes around MGC16275 on UCSC Golden Path with GeneCards custom track
MGC16275 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
MGC16275 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC16275 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC16275 Gene

Proteins for MGC16275 Gene

Post-translational modifications for MGC16275 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC16275 Gene

Domains & Families for MGC16275 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MGC16275 Gene

Function for MGC16275 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC16275 Gene

Localization for MGC16275 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGC16275 Gene

Pathways & Interactions for MGC16275 Gene

PathCards logo

SuperPathways for MGC16275 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MGC16275 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MGC16275 Gene

Drugs & Compounds for MGC16275 Gene

No Compound Related Data Available

Transcripts for MGC16275 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MGC16275 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002C96DA_9606 lncRNA 2501 5

RefSeq: NR_026914,

Ensembl: ENST00000499670 (view in UCSC) ,

LncBook: HSALNT0245098,

LNCipedia: lnc-BTBD17-3:2,

NONCODE: NONHSAT055775.2,

URS00019D5FE3_9606 lncRNA 3321 1

ENA: MN297504.1:1..3337:ncRNA,

URS00009AFE2A_9606 lncRNA 2507 1

NONCODE: NONHSAT176563.1,

URS00008B4410_9606 lncRNA 2485 1

LNCipedia: lnc-BTBD17-3:4,

MGC16275 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MGC16275 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MGC16275 Gene

No ASD Table

Relevant External Links for MGC16275 Gene

GeneLoc Exon Structure for
MGC16275

Expression for MGC16275 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MGC16275 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MGC16275

SOURCE GeneReport for Unigene cluster for MGC16275 Gene:

Hs.706954
genes like me logo Genes that share expression patterns with MGC16275: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC16275 Gene

Orthologs for MGC16275 Gene

No data available for Orthologs and Evolution for MGC16275 Gene

Paralogs for MGC16275 Gene

No data available for Paralogs for MGC16275 Gene

Variants for MGC16275 Gene

Additional dbSNP identifiers (rs#s) for MGC16275 Gene

Structural Variations from Database of Genomic Variants (DGV) for MGC16275 Gene

Variant ID Type Subtype PubMed ID
dgv12e196 CNV duplication 17116639
dgv3282n100 CNV gain 25217958
dgv372n27 CNV gain 19166990
dgv5768n54 CNV gain 21841781
dgv587e214 CNV gain 21293372
esv2751770 CNV gain 17911159
esv2761978 CNV gain 21179565
esv3573820 CNV gain 25503493
esv3641230 CNV gain 21293372
nsv509673 CNV insertion 20534489
nsv517569 CNV gain+loss 19592680
nsv833538 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for MGC16275 Gene

Disorders for MGC16275 Gene

MalaCards: The human disease database

(2) MalaCards diseases for MGC16275 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 6
  • rp6
retinitis pigmentosa 3
  • rp3
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with MGC16275: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for MGC16275 Gene

Publications for MGC16275 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for MGC16275 Gene

Products for MGC16275 Gene

Sources for MGC16275 Gene