Aliases for MGC16275 Gene

Subcategory (RNA class) for MGC16275 Gene

lncRNA

Quality Score for this RNA gene is

16

Aliases for MGC16275 Gene

  • Uncharacterized Protein MGC16275 3
  • HSALNG0118635 169
  • NONHSAG022690 94
  • CTD-2514K5.2 3
  • Lnc-BTBD17-3 170

External Ids for MGC16275 Gene

Previous GeneCards Identifiers for MGC16275 Gene

  • GC17U990262
  • GC17M072206

Summaries for MGC16275 Gene

GeneCards Summary for MGC16275 Gene

MGC16275 (Uncharacterized Protein MGC16275) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for MGC16275 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MGC16275 Gene

Genomics for MGC16275 Gene

GeneHancer (GH) Regulatory Elements for MGC16275 Gene

Promoters and enhancers for MGC16275 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J074209 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.4 385 6.5 SIN3A CTCF POLR2A ZNF362 CC2D1A ETV6 L3MBTL2 MAX RAD21 ZNF121 ENSG00000246731 MGC16275 TTYH2 NUP85 NT5C NAT9 C17orf80 SLC16A5 RN7SL573P FAM104A
GH17J074207 Enhancer 0.4 ENCODE 0.4 +5.8 5836 0.2 POLR2A ZNF362 SMAD5 piR-43106-097 NONHSAG022689.2 RPL38 MGC16275
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MGC16275 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MGC16275 gene promoter:
  • AML1a
  • AP-2alpha
  • AP-2alphaA
  • AP-2beta
  • AP-2gamma
  • AP-4
  • FOXD1
  • HNF-4alpha1
  • HNF-4alpha2
  • Pax-4a

Genomic Locations for MGC16275 Gene

Genomic Locations for MGC16275 Gene
chr17:74,209,980-74,213,321
(GRCh38/hg38)
Size:
3,342 bases
Orientation:
Minus strand
chr17:72,206,119-72,209,481
(GRCh37/hg19)
Size:
3,363 bases
Orientation:
Minus strand

Genomic View for MGC16275 Gene

Genes around MGC16275 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGC16275 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC16275 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC16275 Gene

Proteins for MGC16275 Gene

Post-translational modifications for MGC16275 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC16275 Gene

Domains & Families for MGC16275 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MGC16275 Gene

Function for MGC16275 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC16275 Gene

Localization for MGC16275 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGC16275 Gene

Pathways & Interactions for MGC16275 Gene

PathCards logo

SuperPathways for MGC16275 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MGC16275 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGC16275 Gene

Drugs & Compounds for MGC16275 Gene

No Compound Related Data Available

Transcripts for MGC16275 Gene

mRNA/cDNA for MGC16275 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(1) LncBook transcripts :
(2) LNCipedia transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for MGC16275 Gene

No ASD Table

Relevant External Links for MGC16275 Gene

GeneLoc Exon Structure for
MGC16275

Expression for MGC16275 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MGC16275 Gene

SOURCE GeneReport for Unigene cluster for MGC16275 Gene:

Hs.706954
genes like me logo Genes that share expression patterns with MGC16275: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC16275 Gene

Orthologs for MGC16275 Gene

No data available for Orthologs and Evolution for MGC16275 Gene

Paralogs for MGC16275 Gene

No data available for Paralogs for MGC16275 Gene

Variants for MGC16275 Gene

Sequence variations from dbSNP and Humsavar for MGC16275 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000108139 -- 74,212,251(-) C/G intron_variant
rs1000859198 -- 74,211,892(-) C/G intron_variant
rs1001280115 -- 74,211,360(-) C/T non_coding_transcript_variant
rs1001307131 -- 74,213,331(-) G/C upstream_transcript_variant
rs1001709978 -- 74,211,579(-) C/A/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MGC16275 Gene

Variant ID Type Subtype PubMed ID
dgv12e196 CNV duplication 17116639
dgv3282n100 CNV gain 25217958
dgv372n27 CNV gain 19166990
dgv5768n54 CNV gain 21841781
dgv587e214 CNV gain 21293372
esv2751770 CNV gain 17911159
esv2761978 CNV gain 21179565
esv3573820 CNV gain 25503493
esv3641230 CNV gain 21293372
nsv509673 CNV insertion 20534489
nsv517569 CNV gain+loss 19592680
nsv833538 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for MGC16275 Gene

Disorders for MGC16275 Gene

No disorders were found for MGC16275 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for MGC16275 Gene

Publications for MGC16275 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for MGC16275 Gene

Products for MGC16275 Gene

Sources for MGC16275 Gene