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Aliases for MGC16275 Gene

Subcategory (RNA class) for MGC16275 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for MGC16275 Gene

  • Uncharacterized Protein MGC16275 3 5
  • CTD-2514K5.2 3

External Ids for MGC16275 Gene

Previous GeneCards Identifiers for MGC16275 Gene

  • GC17U990262
  • GC17M072206

Summaries for MGC16275 Gene

GeneCards Summary for MGC16275 Gene

MGC16275 (Uncharacterized Protein MGC16275) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for MGC16275 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC16275 Gene

Genomics for MGC16275 Gene

GeneHancer (GH) Regulatory Elements for MGC16275 Gene

Promoters and enhancers for MGC16275 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I074209 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.4 406 6.5 HDGF HNRNPUL1 PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 TTYH2 MGC16275 NT5C NUP85 C17orf80 NAT9 FAM104A RPL38 GC17P074206
GH17I075085 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14 -878.2 -878154 11.9 CLOCK MLX ZFP64 YBX1 YY1 SLC30A9 ZNF143 ZNF263 MCM3 SP3 SLC16A5 ENSG00000206713 GC17M075090 NUP85 UNK NT5C ENSG00000266980 ENSG00000267342 GGA3 NAT9
GH17I074461 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.1 -252.4 -252427 9.3 HDGF PKNOX1 FOXA2 SMAD1 ZFP64 YBX1 IRF4 ZNF766 ZNF207 ZNF143 CD300A NUP85 NAT9 NT5C GGA3 MGC16275 GPR142 CD300LB ARMC7 BTBD17
GH17I074273 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 16.7 -61.2 -61217 1.4 ZNF687 USF1 RFX1 NR2F1 BHLHE40 MAX BACH1 USF2 EBF1 ZNF592 DNAI2 TTYH2 MGC16275 GGA3 ENSG00000266106
GH17I074511 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 14 -300.3 -300262 3.3 YBX1 FEZF1 ZNF213 ZNF416 ZNF548 SP3 ZFP41 MEF2D ZNF610 GLIS1 NUP85 NAT9 NT5C GGA3 RN7SL573P HID1-AS1 CD300E SLC16A5 MIF4GD CDR2L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MGC16275 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the MGC16275 gene promoter:

Genomic Locations for MGC16275 Gene

Genomic Locations for MGC16275 Gene
chr17:74,209,980-74,213,342
(GRCh38/hg38)
Size:
3,363 bases
Orientation:
Minus strand
chr17:72,206,119-72,209,481
(GRCh37/hg19)

Genomic View for MGC16275 Gene

Genes around MGC16275 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGC16275 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC16275 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC16275 Gene

Proteins for MGC16275 Gene

Post-translational modifications for MGC16275 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC16275 Gene

Domains & Families for MGC16275 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MGC16275 Gene

Function for MGC16275 Gene

Phenotypes From GWAS Catalog for MGC16275 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC16275 Gene

Localization for MGC16275 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGC16275 Gene

Pathways & Interactions for MGC16275 Gene

SuperPathways for MGC16275 Gene

No Data Available

Interacting Proteins for MGC16275 Gene

Gene Ontology (GO) - Biological Process for MGC16275 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGC16275 Gene

Drugs & Compounds for MGC16275 Gene

No Compound Related Data Available

Transcripts for MGC16275 Gene

mRNA/cDNA for MGC16275 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MGC16275 Gene

Uncharacterized protein MGC16275:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MGC16275 Gene

No ASD Table

Relevant External Links for MGC16275 Gene

GeneLoc Exon Structure for
MGC16275

Expression for MGC16275 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MGC16275 Gene

SOURCE GeneReport for Unigene cluster for MGC16275 Gene:

Hs.706954
genes like me logo Genes that share expression patterns with MGC16275: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC16275 Gene

Orthologs for MGC16275 Gene

Evolution for MGC16275 Gene

ENSEMBL:
Gene Tree for MGC16275 (if available)
TreeFam:
Gene Tree for MGC16275 (if available)

No data available for Orthologs for MGC16275 Gene

Paralogs for MGC16275 Gene

No data available for Paralogs for MGC16275 Gene

Variants for MGC16275 Gene

Sequence variations from dbSNP and Humsavar for MGC16275 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000108139 -- 74,212,251(-) C/G intron_variant
rs1000859198 -- 74,211,892(-) C/G intron_variant
rs1001280115 -- 74,211,360(-) C/T non_coding_transcript_variant
rs1001307131 -- 74,213,331(-) G/C upstream_transcript_variant
rs1001709978 -- 74,211,579(-) C/A/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MGC16275 Gene

Variant ID Type Subtype PubMed ID
dgv12e196 CNV duplication 17116639
dgv3282n100 CNV gain 25217958
dgv372n27 CNV gain 19166990
dgv5768n54 CNV gain 21841781
dgv587e214 CNV gain 21293372
esv2751770 CNV gain 17911159
esv2761978 CNV gain 21179565
esv3573820 CNV gain 25503493
esv3641230 CNV gain 21293372
nsv509673 CNV insertion 20534489
nsv517569 CNV gain+loss 19592680
nsv833538 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for MGC16275 Gene

Disorders for MGC16275 Gene

Additional Disease Information for MGC16275

No disorders were found for MGC16275 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGC16275 Gene

Publications for MGC16275 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for MGC16275 Gene

Sources for MGC16275 Gene

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