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Aliases for MGC16275 Gene
Data sources for MGC16275 Gene:
Subcategory (RNA class) for MGC16275 Gene
lncRNA
Aliases for MGC16275 Gene
- Uncharacterized Protein MGC16275 (NCBI Entrez Gene, Ensembl)
- NONHSAG022690.2 (NONCODE)
- HSALNG0118635 (LncBook)
- CTD-2514K5.2 (NCBI Entrez Gene)
- Lnc-BTBD17-3 (LNCipedia)
- MGC16275 (Ensembl)
External Ids for MGC16275 Gene
- NCBI Entrez Gene: 85001
- Ensembl: ENSG00000246731
Previous GeneCards Identifiers for MGC16275 Gene
- GC17U990262
- GC17M072206
Summaries for MGC16275 Gene
GeneCards Summary for MGC16275 Gene
MGC16275 (Uncharacterized Protein MGC16275) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MGC16275 include Retinitis Pigmentosa 6 and Retinitis Pigmentosa 3.
Additional gene information for MGC16275 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MGC16275 Gene
Genomics for MGC16275 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for MGC16275 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around MGC16275 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the MGC16275 gene promoter:
-
- AML1a
- AP-2alpha
- AP-2alphaA
- AP-2beta
- AP-2gamma
- AP-4
- FOXD1
- HNF-4alpha1
- HNF-4alpha2
- Pax-4a
Genomic Locations for MGC16275 Gene
Latest Assembly
- chr17:74,209,979-74,213,484
- (GRCh38/hg38)
- Size:
- 3,506 bases
- Orientation:
- Minus strand
Previous Assembly
- chr17:72,206,119-72,209,460
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 3,342 bases
- Orientation:
- Minus strand
- chr17:72,206,119-72,209,481
- (GRCh37/hg19 by Ensembl)
- Size:
- 3,363 bases
- Orientation:
- Minus strand
Genomic View for MGC16275 Gene
Genes around MGC16275 on UCSC Golden Path with GeneCards custom track
MGC16275 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 17q25.1 by Entrez Gene
- 17q25.1 by Ensembl
MGC16275 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for MGC16275 Gene
Proteins for MGC16275 Gene
Post-translational modifications for MGC16275 Gene
No Post-translational modifications
No data available for DME Specific Peptides for MGC16275 Gene
Domains & Families for MGC16275 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MGC16275 Gene
Function for MGC16275 Gene
Phenotypes From GWAS Catalog for MGC16275 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC16275 Gene
Localization for MGC16275 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGC16275 Gene
Transcripts for MGC16275 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for MGC16275 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00002C96DA_9606 | lncRNA | 2503 | 5 |
RefSeq: NR_026914, Ensembl: ENST00000499670 (view in UCSC) , LncBook: HSALNT0245098, LNCipedia: lnc-BTBD17-3:2, NONCODE: NONHSAT055775.2, |
| URS00000126E2_9606 | lncRNA | 590 | 4 |
Ensembl: ENST00000532794 (view in UCSC) , LncBook: HSALNT0245104, LNCipedia: lnc-BTBD17-3:1, NONCODE: NONHSAT055776.2, |
| URS00003D1FA2_9606 | lncRNA | 536 | 4 |
Ensembl: ENST00000531617 (view in UCSC) , LncBook: HSALNT0245105, LNCipedia: lnc-BTBD17-3:3, NONCODE: NONHSAT055777.2, |
| URS0000EEF033_9606 | lncRNA | 2589 | 1 |
Ensembl: ENST00000670574 (view in UCSC) , |
| URS0000EF1035_9606 | lncRNA | 2490 | 1 |
Ensembl: ENST00000662857 (view in UCSC) , |
MGC16275 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for MGC16275 Gene
- 1 REFSEQ mRNAs :
- 2 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for MGC16275 Gene
- GeneLoc Exon Structure for
- MGC16275
Expression for MGC16275 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MGC16275
SOURCE GeneReport for Unigene cluster for MGC16275 Gene:
Hs.706954
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC16275 Gene
Orthologs for MGC16275 Gene
No data available for Orthologs for MGC16275 Gene
Paralogs for MGC16275 Gene
No data available for Paralogs for MGC16275 Gene
Variants for MGC16275 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv12e196 | CNV | duplication | 17116639 |
| dgv3282n100 | CNV | gain | 25217958 |
| dgv372n27 | CNV | gain | 19166990 |
| dgv5768n54 | CNV | gain | 21841781 |
| dgv587e214 | CNV | gain | 21293372 |
| esv2751770 | CNV | gain | 17911159 |
| esv2761978 | CNV | gain | 21179565 |
| esv3573820 | CNV | gain | 25503493 |
| esv3641230 | CNV | gain | 21293372 |
| nsv509673 | CNV | insertion | 20534489 |
| nsv517569 | CNV | gain+loss | 19592680 |
| nsv833538 | CNV | gain | 17160897 |
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for MGC16275 Gene
Disorders for MGC16275 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| retinitis pigmentosa 6 |
|
|
| retinitis pigmentosa 3 |
|
|
Search MGC16275 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for MGC16275
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for MGC16275 Gene
Publications for MGC16275 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
No data available for Mastermind for MGC16275 Gene
Products for MGC16275 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for MGC16275
- Origene Custom Protein Services for MGC16275
- Browse OriGene Inhibitory RNA Products For MGC16275
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for MGC16275
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For MGC16275
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for MGC16275
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for MGC16275
- Search GeneCopoeia for miRNA 3'UTR Target clone products for MGC16275
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for MGC16275
Sources for MGC16275 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB