Aliases for MGC16275 Gene

Data sources for MGC16275 Gene:

Subcategory (RNA class) for MGC16275 Gene

lncRNA

Aliases for MGC16275 Gene

External Ids for MGC16275 Gene

Previous GeneCards Identifiers for MGC16275 Gene

  • GC17U990262
  • GC17M072206

Summaries for MGC16275 Gene

GeneCards Summary for MGC16275 Gene

MGC16275 (Uncharacterized Protein MGC16275) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with MGC16275 include Retinitis Pigmentosa 6 and Retinitis Pigmentosa 3.

Additional gene information for MGC16275 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MGC16275 Gene

Genomics for MGC16275 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for MGC16275 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MGC16275 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the MGC16275 gene promoter:
  • AML1a
  • AP-2alpha
  • AP-2alphaA
  • AP-2beta
  • AP-2gamma
  • AP-4
  • FOXD1
  • HNF-4alpha1
  • HNF-4alpha2
  • Pax-4a

Genomic Locations for MGC16275 Gene

Latest Assembly
chr17:74,209,979-74,213,484
(GRCh38/hg38)
Size:
3,506 bases
Orientation:
Minus strand

Previous Assembly
chr17:72,206,119-72,209,460
(GRCh37/hg19 by Entrez Gene)
Size:
3,342 bases
Orientation:
Minus strand

chr17:72,206,119-72,209,481
(GRCh37/hg19 by Ensembl)
Size:
3,363 bases
Orientation:
Minus strand

Genomic View for MGC16275 Gene

Genes around MGC16275 on UCSC Golden Path with GeneCards custom track
MGC16275 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
MGC16275 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGC16275 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGC16275 Gene

Proteins for MGC16275 Gene

Post-translational modifications for MGC16275 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGC16275 Gene

Domains & Families for MGC16275 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MGC16275 Gene

Function for MGC16275 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC16275 Gene

Localization for MGC16275 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGC16275 Gene

Pathways & Interactions for MGC16275 Gene

PathCards logo

SuperPathways for MGC16275 Gene

No Data Available

Gene Ontology (GO) - Biological Process for MGC16275 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for MGC16275 Gene

Drugs & Compounds for MGC16275 Gene

No Compound Related Data Available

Transcripts for MGC16275 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for MGC16275 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002C96DA_9606 lncRNA 2503 5

RefSeq: NR_026914,

Ensembl: ENST00000499670 (view in UCSC) ,

LncBook: HSALNT0245098,

LNCipedia: lnc-BTBD17-3:2,

NONCODE: NONHSAT055775.2,

URS00000126E2_9606 lncRNA 590 4

Ensembl: ENST00000532794 (view in UCSC) ,

LncBook: HSALNT0245104,

LNCipedia: lnc-BTBD17-3:1,

NONCODE: NONHSAT055776.2,

URS00003D1FA2_9606 lncRNA 536 4

Ensembl: ENST00000531617 (view in UCSC) ,

LncBook: HSALNT0245105,

LNCipedia: lnc-BTBD17-3:3,

NONCODE: NONHSAT055777.2,

URS0000EEF033_9606 lncRNA 2589 1

Ensembl: ENST00000670574 (view in UCSC) ,

URS0000EF1035_9606 lncRNA 2490 1

Ensembl: ENST00000662857 (view in UCSC) ,

MGC16275 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for MGC16275 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for MGC16275 Gene

No ASD Table

Relevant External Links for MGC16275 Gene

GeneLoc Exon Structure for
MGC16275

Expression for MGC16275 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MGC16275 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for MGC16275

SOURCE GeneReport for Unigene cluster for MGC16275 Gene:

Hs.706954
genes like me logo Genes that share expression patterns with MGC16275: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC16275 Gene

Orthologs for MGC16275 Gene

Evolution for MGC16275 Gene

ENSEMBL:
Gene Tree for MGC16275 (if available)
TreeFam:
Gene Tree for MGC16275 (if available)

No data available for Orthologs for MGC16275 Gene

Paralogs for MGC16275 Gene

No data available for Paralogs for MGC16275 Gene

Variants for MGC16275 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for MGC16275 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for MGC16275 Gene

Variant ID Type Subtype PubMed ID
dgv12e196 CNV duplication 17116639
dgv3282n100 CNV gain 25217958
dgv372n27 CNV gain 19166990
dgv5768n54 CNV gain 21841781
dgv587e214 CNV gain 21293372
esv2751770 CNV gain 17911159
esv2761978 CNV gain 21179565
esv3573820 CNV gain 25503493
esv3641230 CNV gain 21293372
nsv509673 CNV insertion 20534489
nsv517569 CNV gain+loss 19592680
nsv833538 CNV gain 17160897

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for MGC16275 Gene

Disorders for MGC16275 Gene

MalaCards: The human disease database

(2) MalaCards diseases for MGC16275 Gene - From: COP

Disorder Aliases PubMed IDs
retinitis pigmentosa 6
  • rp6
retinitis pigmentosa 3
  • rp3
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MGC16275

Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with MGC16275: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MGC16275 Gene

Publications for MGC16275 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for MGC16275 Gene

Products for MGC16275 Gene

Sources for MGC16275 Gene