Aliases for MGC16025 Gene
Subcategory (RNA class) for MGC16025 Gene
lncRNA
Quality Score for this RNA gene is
1
Aliases for MGC16025 Gene
- Uncharacterized LOC85009 3
External Ids for MGC16025 Gene
- Entrez Gene: 85009
ORGUL Members for MGC16025 Gene
Previous GeneCards Identifiers for MGC16025 Gene
- GC02M238057
- GC02M238688
- GC02M240030
- GC02M240327
- GC02U900722
- GC02M239781
- GC02M240115
Summaries for MGC16025 Gene
GeneCards Summary for MGC16025 Gene
MGC16025 (Uncharacterized LOC85009) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are PEDF Induced Signaling and NFAT and Cardiac Hypertrophy.
Additional gene information for MGC16025 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MGC16025 Gene
Genomics for MGC16025 Gene
GeneHancer (GH) Regulatory Elements for MGC16025 Gene
Promoters and enhancers for MGC16025 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02I239190 | Enhancer | 0.4 | dbSUPER | 550.8 | +1.3 | 1326 | 6.4 | CTCF POLR2A | MGC16025 HDAC4 LOC101928111 GC02M239160 | |
| GH02I239198 | Enhancer | 0.6 | Ensembl ENCODE dbSUPER | 0.8 | -3.9 | -3864 | 2.1 | HDAC4 LOC101928111 MGC16025 GC02M239271 | ||
| GH02I239220 | Enhancer | 1.5 | FANTOM5 Ensembl ENCODE dbSUPER | 0.3 | -29.1 | -29096 | 8.3 | ELF3 PKNOX1 FOXA2 ARID4B RAD21 RARA YY1 RCOR1 CREM RXRA | HDAC4 LOC101928111 MGC16025 GC02M239271 | |
| GH02I239238 | Enhancer | 1.4 | FANTOM5 Ensembl ENCODE dbSUPER | 0.3 | -44.6 | -44554 | 3.6 | HDAC1 TEAD4 MAX RAD21 YY1 CTBP1 NCOR1 POLR2A HNF4G RCOR1 | HDAC4 LOC101928111 MGC16025 GC02M239271 | |
| GH02I239263 | Enhancer | 1.7 | FANTOM5 Ensembl ENCODE dbSUPER | 0.2 | -71.0 | -71026 | 6.2 | HDGF PKNOX1 CLOCK ATF1 FOXA2 SMAD1 NEUROD1 IRF4 GATA2 ZNF207 | HDAC4 LOC101928111 MIR4269 GC02M239271 MGC16025 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around MGC16025 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for MGC16025 Gene
Genomic Locations for MGC16025 Gene
- chr2:239,193,331-239,195,457
- (GRCh38/hg38)
- Size:
- 2,127 bases
- Orientation:
- Minus strand
- chr2:240,115,027-240,117,153
- (GRCh37/hg19)
Genomic View for MGC16025 Gene
Genes around MGC16025 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 2q37.3 by Entrez Gene
MGC16025 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for MGC16025 Gene
Proteins for MGC16025 Gene
-
Protein details for MGC16025 Gene (UniProtKB/TrEMBL)
- Protein Symbol:
- Q53SB4
- Recommended name:
- Uncharacterized protein MGC16025
- Protein Accession:
- Q53SB4
Protein attributes for MGC16025 Gene
- Size:
- 31 amino acids
- Molecular mass:
- 3359 Da
- Quaternary structure:
- No Data Available
-
Protein details for MGC16025 Gene (UniProtKB/TrEMBL)
- Protein Symbol:
- Q53SM2
- Recommended name:
- Uncharacterized protein MGC16025
- Protein Accession:
- Q53SM2
Protein attributes for MGC16025 Gene
- Size:
- 1052 amino acids
- Molecular mass:
- 115600 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for MGC16025 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for MGC16025
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for MGC16025
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- Search GeneTex for Proteins for MGC16025
No data available for DME Specific Peptides for MGC16025 Gene
Domains & Families for MGC16025 Gene
Protein Domains for MGC16025 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MGC16025 Gene
Function for MGC16025 Gene
Phenotypes From GWAS Catalog for MGC16025 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
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-
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CRISPR Products
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miRNA Products
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Inhibitory RNA Products
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Clone Products
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- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MGC16025
-
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGC16025 Gene
Localization for MGC16025 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGC16025 Gene
Pathways & Interactions for MGC16025 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Cyclins and Cell Cycle Regulation | ||
| 2 | Macrophage Differentiation and Growth Inhibition by METS | ||
| 3 | BRCA1 Pathway | ||
| 4 | GPCR Pathway |
.55
|
|
| 5 | PEDF Induced Signaling | ||
Pathways by source for MGC16025 Gene
15 Qiagen pathways for MGC16025 Gene
Interacting Proteins for MGC16025 Gene
No data available for SIGNOR curated interactions for MGC16025 Gene
Transcripts for MGC16025 Gene
mRNA/cDNA for MGC16025 Gene
- (1) REFSEQ mRNAs :
- (2) Additional mRNA sequences :
Unigene Clusters for MGC16025 Gene
CRISPR Products
- Browse CRISPR knockouts for MGC16025
miRNA Products
- Search ViGene Biosciences for MGC16025
Inhibitory RNA Products
- Origene RNAi and shrna products in human, mouse, rat for MGC16025
- Browse OriGene Inhibitory RNA Products For MGC16025
- Search ViGene Biosciences for MGC16025
Clone Products
- GenScript: Custom all cDNA clones Services for MGC16025
- VectorBuilder custom plasmid, inducible vectors for MGC16025
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MGC16025
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Relevant External Links for MGC16025 Gene
- GeneLoc Exon Structure for
- MGC16025
Expression for MGC16025 Gene
SOURCE GeneReport for Unigene cluster for MGC16025 Gene:
Hs.744565Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGC16025 Gene
Orthologs for MGC16025 Gene
No data available for Orthologs and Evolution for MGC16025 Gene
Paralogs for MGC16025 Gene
(6) SIMAP similar genes for MGC16025 Gene using alignment to 2 proteins:
No data available for Paralogs for MGC16025 Gene
Variants for MGC16025 Gene
| SNP ID | Clin | Chr 02 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000578689 | -- | 239,194,341(-) | A/G | non_coding_transcript_variant | |
| rs1001007293 | -- | 239,193,465(-) | G/A | non_coding_transcript_variant | |
| rs1001452365 | -- | 239,197,027(-) | C/T | upstream_transcript_variant | |
| rs1001458947 | -- | 239,197,249(-) | G/A | upstream_transcript_variant | |
| rs1002676797 | -- | 239,196,008(-) | G/C | upstream_transcript_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| nsv834582 | CNV | loss | 17160897 |
| nsv1010141 | CNV | loss | 25217958 |
| dgv4195n100 | CNV | gain | 25217958 |
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for MGC16025 Gene
Disorders for MGC16025 Gene
Additional Disease Information for MGC16025
- Genetic Association Database
- (GAD)
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
No disorders were found for MGC16025 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGC16025 Gene
Publications for MGC16025 Gene
- Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis. (PMID: 23453885) Cross-Disorder Group of the Psychiatric Genomics Consortium (Lancet (London, England) 2013) 3 58
- Overexpression of meloe gene in melanomas is controlled both by specific transcription factors and hypomethylation. (PMID: 24086527) Bobinet M … Moreau-Aubry A (PloS one 2013) 3 58
- The melanoma antigens MELOE-1 and MELOE-2 are translated from a bona fide polycistronic mRNA containing functional IRES sequences. (PMID: 24086473) Carbonnelle D … Lang F (PloS one 2013) 3 58
- Genomewide association study of movement-related adverse antipsychotic effects. (PMID: 19875103) Aberg K … van den Oord EJ (Biological psychiatry 2010) 44 58
- Frequent occurrence of high affinity T cells against MELOE-1 makes this antigen an attractive target for melanoma immunotherapy. (PMID: 20217862) Godet Y … Labarrière N (European journal of immunology 2010) 3 58
Products for MGC16025 Gene
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- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for MGC16025
- VectorBuilder custom plasmid, inducible vectors for MGC16025
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for MGC16025
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for MGC16025
- Search GeneTex for Proteins for MGC16025
Sources for MGC16025 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew