Aliases for MGAT4EP Gene

Aliases for MGAT4EP Gene

  • MGAT4 Family Member E, Pseudogene 2 3 5
  • Alpha-1,3-Mannosyl-Glycoprotein 4-Beta-N-Acetylglucosaminyltransferase-Like Protein Pseudogene 3
  • MGAT4 Family, Member E, Pseudogene 2

External Ids for MGAT4EP Gene

Summaries for MGAT4EP Gene

GeneCards Summary for MGAT4EP Gene

MGAT4EP (MGAT4 Family Member E, Pseudogene) is a Pseudogene.

Additional gene information for MGAT4EP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for MGAT4EP Gene

Genomics for MGAT4EP Gene

GeneHancer (GH) Regulatory Elements for MGAT4EP Gene

Promoters and enhancers for MGAT4EP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J202821 Enhancer 0.8 Ensembl ENCODE 750.6 +1.7 1720 1.7 CBFA2T2 ZSCAN4 NR2C1 RAD51 USF1 MNT USF2 BCOR WT1 KDM1A MGAT4EP KDM5B PCAT6 piR-43106-015
GH01J202819 Enhancer 0.5 Ensembl 750.6 -0.8 -756 0.6 PRDM1 CTBP1 RUNX3 BATF IKZF1 MGAT4EP KDM5B PCAT6
GH01J202852 Enhancer 0.9 Ensembl ENCODE 12.3 +32.1 32143 0.7 CTCF CC2D1A L3MBTL2 RAD21 MNT TEAD4 REST CTBP1 POLR2A GTF2F1 KDM5B PCAT6 MGAT4EP piR-43106-015 ENSG00000214796 LOC730222 lnc-RABIF-1
GH01J202847 Enhancer 0.6 Ensembl 11.8 +27.5 27544 1.6 SP1 RXRA RXRB ZFHX2 BATF HNF4A KDM1A FEZF1 HNF4G ATF2 piR-43106-015 KDM5B PCAT6 MGAT4EP LOC730222
GH01J202782 Enhancer 0.5 Ensembl 11.6 -37.2 -37157 1.8 SREBF1 ZNF362 ZNF18 CEBPB ZNF335 ZNF664 ZBTB33 KDM5B PCAT6 MGAT4EP SLC25A39P1 LOC100506672 lnc-SYT2-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around MGAT4EP on UCSC Golden Path with GeneCards custom track

Genomic Locations for MGAT4EP Gene

Genomic Locations for MGAT4EP Gene
chr1:202,820,257-202,827,225
(GRCh38/hg38)
Size:
6,969 bases
Orientation:
Plus strand
chr1:202,789,394-202,796,353
(GRCh37/hg19)
Size:
6,960 bases
Orientation:
Plus strand

Genomic View for MGAT4EP Gene

Genes around MGAT4EP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MGAT4EP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MGAT4EP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MGAT4EP Gene

Proteins for MGAT4EP Gene

Post-translational modifications for MGAT4EP Gene

No Post-translational modifications

No data available for DME Specific Peptides for MGAT4EP Gene

Domains & Families for MGAT4EP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for MGAT4EP Gene

Function for MGAT4EP Gene

Phenotypes From GWAS Catalog for MGAT4EP Gene

Phenotypes for MGAT4EP Gene

GenomeRNAi human phenotypes for MGAT4EP:
genes like me logo Genes that share phenotypes with MGAT4EP: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MGAT4EP Gene

Localization for MGAT4EP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MGAT4EP Gene

Pathways & Interactions for MGAT4EP Gene

PathCards logo

SuperPathways for MGAT4EP Gene

No Data Available

Gene Ontology (GO) - Biological Process for MGAT4EP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MGAT4EP Gene

Drugs & Compounds for MGAT4EP Gene

No Compound Related Data Available

Transcripts for MGAT4EP Gene

mRNA/cDNA for MGAT4EP Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MGAT4EP Gene

No ASD Table

Relevant External Links for MGAT4EP Gene

GeneLoc Exon Structure for
MGAT4EP
ECgene alternative splicing isoforms for
MGAT4EP

Expression for MGAT4EP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MGAT4EP Gene

NURSA nuclear receptor signaling pathways regulating expression of MGAT4EP Gene:

MGAT4EP
genes like me logo Genes that share expression patterns with MGAT4EP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MGAT4EP Gene

Orthologs for MGAT4EP Gene

This gene was present in the common ancestor of animals.

Orthologs for MGAT4EP Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia -- 33
  • 33 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4931440L10Rik 33
  • 29 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 33
  • 19 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 33
  • 18 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 33
  • 18 (a)
OneToOne
chicken
(Gallus gallus)
Aves MGAT4C 33
  • 16 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 33
  • 16 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii zgc:101663 33
  • 15 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG17173 33
  • 8 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.589 33
  • 8 (a)
ManyToMany
-- 33
ManyToMany
Species where no ortholog for MGAT4EP was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MGAT4EP Gene

ENSEMBL:
Gene Tree for MGAT4EP (if available)
TreeFam:
Gene Tree for MGAT4EP (if available)

Paralogs for MGAT4EP Gene

No data available for Paralogs for MGAT4EP Gene

Variants for MGAT4EP Gene

Sequence variations from dbSNP and Humsavar for MGAT4EP Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000199339 -- 202,824,913(+) C/T intron_variant
rs1000819342 -- 202,823,223(+) T/C intron_variant
rs1000965801 -- 202,824,897(+) A/C intron_variant
rs1001491323 -- 202,818,560(+) A/G upstream_transcript_variant
rs1001748934 -- 202,821,586(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MGAT4EP Gene

Variant ID Type Subtype PubMed ID
nsv4110 CNV insertion 18451855
nsv832359 CNV loss 17160897

Additional Variant Information for MGAT4EP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MGAT4EP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MGAT4EP Gene

Disorders for MGAT4EP Gene

Additional Disease Information for MGAT4EP

No disorders were found for MGAT4EP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MGAT4EP Gene

Publications for MGAT4EP Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 56
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 56
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for MGAT4EP Gene

Sources for MGAT4EP Gene